Factsheet for Os09t0446200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 12006626

gfp PMID: 12006626

M Erhardt, V Stoppin-Mellet, S Campagne, J Canaday, J Mutterer, T Fabian, M Sauter, T Muller, C Peter, AM Lambert, AC Schmit

Institut de Biologie Moléculaire des Plantes, Centre National de la Recherche Scientifique UPR 2357, Université Louis Pasteur, 12 rue du Général Zimmer F-67084, Strasbourg Cedex, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0435800-00
Os03t0435900-01
Os03t0824000-01
Os11t0362633-00
Os11t0368172-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	Os03t0435800-00	AT1G73790.1	22404201
AT5G06680.1	Os03t0435900-01	AT1G73790.1	22404201
AT5G06680.1	Os03t0824000-01	AT1G73790.1	22404201
AT5G06680.1	Os11t0362633-00	AT1G73790.1	22404201
AT5G06680.1	Os11t0368172-01	AT1G73790.1	22404201
AT5G06680.1	Os03t0435800-00	AT1G73790.1	22427335
AT5G06680.1	Os03t0435900-01	AT1G73790.1	22427335
AT5G06680.1	Os03t0824000-01	AT1G73790.1	22427335
AT5G06680.1	Os11t0362633-00	AT1G73790.1	22427335
AT5G06680.1	Os11t0368172-01	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G066810.2	Barley	cytosol	78.0	92.52
TraesCS5B01G230400.1	Wheat	cytosol	90.73	92.48
KXG35736	Sorghum	cytosol	91.2	91.97
TraesCS5D01G235900.1	Wheat	cytosol	90.13	91.88
TraesCS6B01G140000.1	Wheat	cytosol	87.63	90.21
TraesCS6D01G100700.1	Wheat	cytosol	87.04	90.15
TraesCS6A01G111800.1	Wheat	cytosol	86.92	90.02
Zm00001d020664_P016	Maize	cytosol	87.87	86.84
TraesCS5A01G232100.1	Wheat	cytosol	89.18	86.01
HORVU6Hr1G020090.2	Barley	plastid	89.42	83.83
GSMUA_Achr10P...	Banana	cytosol	58.98	78.48
GSMUA_Achr8P22770_001	Banana	cytosol	56.36	75.36
CDY14071	Canola	cytosol	50.89	69.93
Bra028722.1-P	Field mustard	cytosol	50.65	69.72
AT5G06680.1	Thale cress	cytosol	63.97	64.2
VIT_08s0007g06730.t01	Wine grape	cytosol	64.57	63.58
CDY04999	Canola	cytosol	60.52	62.3
KRH67085	Soybean	cytosol	61.83	61.61
KRG95411	Soybean	cytosol	61.47	61.4
CDX70079	Canola	cytosol	43.64	57.08
Bra009216.1-P	Field mustard	cytosol	43.64	57.08
PGSC0003DMT400007029	Potato	nucleus	61.83	55.62
Solyc09g009140.2.1	Tomato	nucleus	61.83	55.62
CDX98945	Canola	cytosol	6.18	50.98
Os04t0501700-01	Rice	nucleus	17.72	20.96
Os05t0154500-01	Rice	extracellular, vacuole	15.34	17.11

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.3	EntrezGene:4347202	UniProt:A0A0P0XMI4	ProteinID:BAT08342.1	ncoils:Coil
InterPro:GCP	GO:GO:0000003	GO:GO:0000226	GO:GO:0000922	GO:GO:0000923	GO:GO:0000930
GO:GO:0003674	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0005815
GO:GO:0005819	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886	GO:GO:0005938	GO:GO:0007020
GO:GO:0007049	GO:GO:0008150	GO:GO:0008275	GO:GO:0009605	GO:GO:0009607	GO:GO:0009624
GO:GO:0009898	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0031122	GO:GO:0043015
GO:GO:0051011	GO:GO:0051321	GO:GO:0051415	GO:GO:0055028	GO:GO:0090063	GO:GO:0090307
EnsemblPlantsGene:Os09g0446200	EnsemblPlants:Os09t0446200-01	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI0000DD974D
RefSeq:XP_015612607.1	SEG:seg	:	:	:	:

Description

Gamma tubulin complex protein 3 domain containing protein. (Os09t0446200-01)

Coordinates

chr9:+:16633305..16636532

Molecular Weight (calculated)

93534.4 Da

IEP (calculated)

7.594

GRAVY (calculated)

-0.134

Length

841 amino acids

Sequence
(BLAST)

001: MDDHQTQDLV KELVHRLISA ESGGGGRDAG GALRFAHRLL SSRLAPAVLP DEHALAESVK RRLAASGRPD DALAFADLHA KLSARSRPAS LWPLLYLLDS
101: LSSHRRAAAA ASCLPNLPTA APPRAAGSGA AAAAAAAGGK PASRAPGAPP GGVVLVSKDP DNIREIALRE YTELVLDETE VSEAALVRDV LYACQGIDGR
201: YVRFDKGSDA YDLPDGVRVP RSTRTLVRKL CELGWLFRKV RGFISDNISR SPSDAATEVG TVAQAFCSAL QEELSDYYKL LAVLESYSLN PIPTPGSDSG
301: VSGNYLSLRR LAVWLAEPAV RMRLMAVLVD GCRGLRGGAM AGAIHGHAQH GDPTFQDFMG RLLRRVCSPL FEMVRSWVLE GELEDVFAEF FIVGQPVKAE
401: SLWQEGYLLQ SDMLPAFISP VLAQRILRTG KSINFLKVCC DDNGWADAAT EAAVCVGTTT SRGGLGYGQI DALEALVVEA AKRIDRHLMD VIHKRYRFKD
501: HCLAIKRYLL LGQGDFVQYL MDVVGPELSE PANRISSFHL AGLLETAIRA SNAQYDDRDI LDRIKVKMMD HGDGDRGWDV FSLEYDARVP LDTVFTASVM
601: KRYLKIFNFL WKLKRVDHSL TGIWKTMKPN CIVSSPFYKE GTNIRSQFVS VLRKCQVLFN EMNHFVTNFQ YYIMFEVLEV SWARFSEEMD SAKDLDDLLL
701: AHDKYLTSIV EKSLLGERSH GILRNLFALF DIILQFRSHA DRWFERIYEL QLRGKGKPKS KAKAKSKEVD SWVDGGRKAM IQLAGELFRK MGEDLDSIAK
801: DYTSSLDAFI AQLPMQQHVD LKFLLFRLDF TEYYSRVSSN K

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.