CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68212
CDX73014
CDY11089
CDY60144

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	CDX68212	AT1G73790.1	22404201
AT5G06680.1	CDX73014	AT1G73790.1	22404201
AT5G06680.1	CDY11089	AT1G73790.1	22404201
AT5G06680.1	CDY60144	AT1G73790.1	22404201
AT5G06680.1	CDX68212	AT1G73790.1	22427335
AT5G06680.1	CDX73014	AT1G73790.1	22427335
AT5G06680.1	CDY11089	AT1G73790.1	22427335
AT5G06680.1	CDY60144	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14071	Canola	cytosol	71.97	96.08
AT5G06680.1	Thale cress	cytosol	83.72	81.62
CDX70079	Canola	cytosol	60.59	76.98
CDX98945	Canola	cytosol	8.94	71.57
VIT_08s0007g06730.t01	Wine grape	cytosol	71.73	68.62
GSMUA_Achr10P...	Banana	cytosol	52.39	67.72
HORVU5Hr1G066810.2	Barley	cytosol	58.02	66.85
GSMUA_Achr8P22770_001	Banana	cytosol	51.04	66.3
KRH67085	Soybean	cytosol	68.05	65.88
KRG95411	Soybean	cytosol	67.2	65.2
TraesCS6D01G100700.1	Wheat	cytosol	62.3	62.68
TraesCS6B01G140000.1	Wheat	cytosol	62.42	62.42
KXG35736	Sorghum	cytosol	63.04	61.75
TraesCS5D01G235900.1	Wheat	cytosol	62.3	61.7
TraesCS6A01G111800.1	Wheat	cytosol	61.08	61.45
TraesCS5B01G230400.1	Wheat	cytosol	61.93	61.33
Os09t0446200-01	Rice	cytosol, nucleus	62.3	60.52
Zm00001d020664_P016	Maize	cytosol	62.18	59.69
TraesCS5A01G232100.1	Wheat	cytosol	61.69	57.8
PGSC0003DMT400007029	Potato	nucleus	65.85	57.54
Solyc09g009140.2.1	Tomato	nucleus	65.73	57.43
HORVU6Hr1G020090.2	Barley	plastid	62.67	57.08
CDX82078	Canola	mitochondrion	3.67	25.21
CDY14072	Canola	cytosol	5.14	23.08
CDY16926	Canola	cytosol	13.71	21.46
CDX70761	Canola	nucleus	17.75	21.39
CDX78748	Canola	nucleus	17.5	20.63
CDY38427	Canola	cytosol	14.08	20.03
CDX78203	Canola	extracellular, vacuole	15.3	16.8
CDX73526	Canola	extracellular, vacuole	15.3	16.8

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.3	GO:A0A078EWM8	EnsemblPlants:CDY04999	ProteinID:CDY04999	ProteinID:CDY04999.1
ncoils:Coil	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005815	GO:GO:0005856
GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	GO:GO:0090063
EnsemblPlantsGene:GSBRNA2T00119732001	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI0004EE498C	SEG:seg

Description

BnaAnng01810D

Coordinates

chrLK031958:+:1003820..1006674

Molecular Weight (calculated)

92637.2 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.205

Length

817 amino acids

Sequence
(BLAST)

001: MKNEEEERVV MEEDDQQKAS DLVHELVLRL LSQNPQTPNP DPSSPTFLKT LRFAHRILRS RLTPSGKSSD ALAFADLYAK FASKTGPGSV NNKWSLLYLL
101: RIVSEDNKLD SSLLLPNLNA AVSSSLGNKK TNGVLLVTKD PENLRDVAFR EYANLIKEEN EVTEEVLVRD VLYACQGIDG KYVKFNSEID GYAVVDYINT
201: PRATRTMVRT LSELGWLFKK VKSFISESMD EDVGTVGQAF CAALQDELSD YYKLLAVLEA QGMNPIPLVS ESAGGSSSYL SLRRLSVWFA EPKVKMRLMA
301: VLVDKCRVLR GGAMAGAIHL HAQHGDPLVH DFMMSLLRCV CSPLFEMVRS WVLEGELEDS FGEFFVVSHP VKVDLLWREG YNLHHGMLPS FISPSLAQRI
401: LRTGKSINFL RVCCDDHGWA DAASEAAAAS GTTTRRGGIG YGETDALEHL VAEAAKRIDK RLLDVLYERY KFKEHCLAIK RYLLLGQGDF VQYLMDIVGP
501: KLSEPANNIS SFELAGFLEA AVRASNAQYD DRDVLDRLKV KMMPHGSGDR GWDVFSLEYE ARAPLDTVFT ESVLSKYLRV FNFLWRLKRV EHALIGIWKT
601: MKPNCITSNS FAKLQSSVKL QLLSALRRCQ VLWNEMNHFV TNFQYYIMFE VLEVSWCNFA KEMEAAKDLD DLLAAHEKYL NSIVGKSLLG EESQTIRKSL
701: FVLFELILRF RSHADRLYEG IYELQIRTKE PGRERNKTQD SSSSWISEGR KAITQRAGEF LQSMSQDMDS IAKEYTTSLD AFLSLLPLQQ SVDLKFLFFR
801: LDFTEFYSRL HSKGRES

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.