CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH65887
KRH66740
KRH75670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	KRH65887	AT1G73790.1	22404201
AT5G06680.1	KRH66740	AT1G73790.1	22404201
AT5G06680.1	KRH75670	AT1G73790.1	22404201
AT5G06680.1	KRH65887	AT1G73790.1	22427335
AT5G06680.1	KRH66740	AT1G73790.1	22427335
AT5G06680.1	KRH75670	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67085	Soybean	cytosol	92.99	92.77
VIT_08s0007g06730.t01	Wine grape	cytosol	75.42	74.36
CDY14071	Canola	cytosol	53.8	74.02
Bra028722.1-P	Field mustard	cytosol	53.44	73.65
AT5G06680.1	Thale cress	cytosol	71.02	71.36
GSMUA_Achr10P...	Banana	cytosol	51.19	68.2
GSMUA_Achr8P22770_001	Banana	cytosol	50.24	67.25
CDY04999	Canola	cytosol	65.2	67.2
HORVU5Hr1G066810.2	Barley	cytosol	55.23	65.59
KXG35736	Sorghum	cytosol	62.0	62.59
Bra009216.1-P	Field mustard	cytosol	47.74	62.52
TraesCS6A01G111800.1	Wheat	cytosol	60.21	62.44
CDX70079	Canola	cytosol	47.62	62.36
TraesCS6D01G100700.1	Wheat	cytosol	60.09	62.32
TraesCS6B01G140000.1	Wheat	cytosol	60.33	62.18
Solyc09g009140.2.1	Tomato	nucleus	68.88	62.03
PGSC0003DMT400007029	Potato	nucleus	68.76	61.93
Os09t0446200-01	Rice	cytosol, nucleus	61.4	61.47
TraesCS5B01G230400.1	Wheat	cytosol	59.98	61.21
TraesCS5D01G235900.1	Wheat	cytosol	59.86	61.09
Zm00001d020664_P016	Maize	cytosol	61.64	60.99
CDX98945	Canola	cytosol	7.36	60.78
TraesCS5A01G232100.1	Wheat	cytosol	59.86	57.8
HORVU6Hr1G020090.2	Barley	plastid	60.93	57.19
KRH66204	Soybean	cytosol, nucleus, peroxisome	17.1	21.69
KRG89851	Soybean	cytosol	11.76	21.43
KRH07351	Soybean	cytosol	16.75	21.23
KRG89853	Soybean	cytosol, extracellular, nucleus	4.28	21.18
KRH16759	Soybean	mitochondrion, nucleus	3.92	18.97
KRH31863	Soybean	endoplasmic reticulum	15.68	18.03
KRH69283	Soybean	plasma membrane	15.68	18.01

Protein Annotations

Gene3D:1.20.120.1900	EntrezGene:100811956	MapMan:20.1.2.1.3	EMBL:ACUP02012106	ncoils:Coil	InterPro:GCP
EnsemblPlantsGene:GLYMA_19G149500	GO:GO:0000003	GO:GO:0000226	GO:GO:0000922	GO:GO:0000923	GO:GO:0003674
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020
GO:GO:0007049	GO:GO:0008150	GO:GO:0008275	GO:GO:0009987	GO:GO:0016043	GO:GO:0031122
GO:GO:0043015	GO:GO:0051011	GO:GO:0051321	GO:GO:0051415	GO:GO:0090307	UniProt:K7MYG9
EnsemblPlants:KRG95411	ProteinID:KRG95411	ProteinID:KRG95411.1	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF14
UniParc:UPI000233EFE1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:40976484..40979103

Molecular Weight (calculated)

96168.8 Da

IEP (calculated)

6.975

GRAVY (calculated)

-0.192

Length

842 amino acids

Sequence
(BLAST)

001: MEEEEDQQKL PDLVKALVHH LLSLNLPPNS PPLNPNSPEF RNSLRYALRI LSSRLTPSVA PDAAAIADSI KRRLASHGHS SQALSFADLF SKFASKAQSV
101: DKKWALIYLL KIISEDRHNN TTATTLLPNL NFSEPATSNK PSNNGGVLLV SKDPENRRDI AFLEFVKLVR EENEVSEEVL VQDVLYACQG VDGKFVKLDS
201: ESKRYVIPVS ITVPRAPRSM VYNLCELGVL FRKVSGYISR SMDRFPNEDV GTVGQAFCSA LQDELSEYYK LLAVLEAQAS NPIPLVSESA SSRNYLSLRR
301: LAVWLAEPLV KMRLMADLVE KCRVLRGGAM VGAIHLHAQH GDPLVHEFMR RLLQRVCSSL FEMVRRWVLE GELEDIFAEF FIVGRPVKAE SLWREGYRLH
401: DAMLPLFISP SLAQRILRTG KSINFLRVCC EDRGWADAAT EVVADHGTMA RRGGFGYGET DTLEFLVDEA SKRIDKHLLD VIFKRYKFKE HCLAIKQYLL
501: LGQGDFVQYL MDIVGPELSE PANTISSFKL SGLLETAIRA SNAQYDDPDI LDRLRVKMMP HESGDRGWDV FSLEYDARVP LDTVFTESVM TRYLRIFNFL
601: WKLRRVEHAL TGAWKTMKPN CITSNSFTRL QHAVKMQLVS TLRRCQVLWV EINHFISNLQ YYIMFEVLEV SWSNFLAEME LAKDLDDLLA AHEKYLHSIV
701: EKSLLGELSQ SLYKSLFVIF DLILRFRSCA DRLYEGIHEL QARITESSIS SRDQNKSRSQ KQLSEKSAEQ GSWIADGRKA LTQRAGEFLR NMEQDLDAIA
801: KEYSSLQEGF ISQLPVQQHV DLKFLFFRLD FNEFYRRLCP SM

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.