CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 4
extracellular 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081381	Potato	cytosol, nucleus, plastid	64.37	34.89
KRH31863	Soybean	endoplasmic reticulum	74.14	17.62
KRH69283	Soybean	plasma membrane	74.14	17.6
VIT_07s0005g00610.t01	Wine grape	vacuole	68.39	16.02
AT3G53760.1	Thale cress	vacuole	64.94	15.17
Solyc09g075190.2.1	Tomato	extracellular, plasma membrane	64.94	15.09
CDX78203	Canola	extracellular, vacuole	63.22	14.78
EES19050	Sorghum	extracellular, vacuole	63.79	14.76
CDX73526	Canola	extracellular, vacuole	62.64	14.65
GSMUA_Achr9P31020_001	Banana	extracellular, vacuole	63.22	14.59
HORVU1Hr1G022100.2	Barley	extracellular, vacuole	60.34	14.04
TraesCS1D01G103700.1	Wheat	extracellular, vacuole	60.34	14.04
TraesCS1B01G123000.1	Wheat	extracellular, vacuole	60.34	14.04
TraesCS1A01G095200.1	Wheat	extracellular, vacuole	60.34	14.04
Os05t0154500-01	Rice	extracellular, vacuole	59.77	13.79
Zm00001d037593_P004	Maize	plasma membrane	63.22	13.14
Bra007026.1-P	Field mustard	golgi, nucleus, plasma membrane	63.22	11.0
KRG89851	Soybean	cytosol	15.52	5.84
KRH66204	Soybean	cytosol, nucleus, peroxisome	15.52	4.07
KRH67085	Soybean	cytosol	19.54	4.03
KRG95411	Soybean	cytosol	18.97	3.92
KRH07351	Soybean	cytosol	14.94	3.92
KRG89853	Soybean	cytosol, extracellular, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.4	EMBL:ACUP02009004	InterPro:GCP	EnsemblPlantsGene:GLYMA_14G175700	GO:GO:0000003
GO:GO:0000226	GO:GO:0000922	GO:GO:0000923	GO:GO:0000930	GO:GO:0003674	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0031122	GO:GO:0043015	GO:GO:0051011
GO:GO:0051321	GO:GO:0051415	GO:GO:0090307	UniProt:K7M7N8	EnsemblPlants:KRH16759	ProteinID:KRH16759
ProteinID:KRH16759.1	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF27	UniParc:UPI0002953A79	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:43423613..43425425

Molecular Weight (calculated)

20713.2 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.101

Length

174 amino acids

Sequence
(BLAST)

001: MWRLREHMAF LVRNLQFYSQ IYVIEFQWNI LQSHIQESHD FTELVGFHQE YQSALISQTF LDIGSGSRIL ESIMKLCLQF CWNIENQDNF SNTYELKHIV
101: DEFNKKSNFL STILRSSRLA GSQRAPFLRR FLLRLNLNSF FEVMCICVVY IQCRRTPVPL PHQLQVVRLG TKNT

Best Arabidopsis Sequence Match ( AT3G53760.3 )
(BLAST)

001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQCFLEESR
401: QLMRLPPRQS TGESDLMVPF QLAATKTIAE EDKYFSRVSL RMPSFGVTVR SSQADMVRSK VSLTGKANLT SDTSVDGWDA IALEYSVDWP MQLFFTQEVL
501: SKYLKVFQYL IRLKRTQMEL EKSWASVMHQ DHIESAQHRK DGLNGSTSQQ RRQGIRPMWR VREHMAFLIR NLQFYIQVDV IESQWKVLQT HIHDSQDFTE
601: LVGFHQEYLS ALISQSFLDI GSVSRILDSI MKLCLQFCWN IENQESNPNT SELENIAEEF NKKSNSLYTI LRSSKLAGSQ RAPFLRRFLL RLNFNSFYEA
701: TARGVLNVVR QRPALPL

Arabidopsis Description

GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.