Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19050 | Sorghum | extracellular, vacuole | 80.53 | 89.63 |
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 71.68 | 80.21 |
| HORVU1Hr1G022100.2 | Barley | extracellular, vacuole | 71.68 | 80.21 |
| TraesCS1A01G095200.1 | Wheat | extracellular, vacuole | 71.57 | 80.08 |
| TraesCS1D01G103700.1 | Wheat | extracellular, vacuole | 71.09 | 79.55 |
| Os05t0154500-01 | Rice | extracellular, vacuole | 70.85 | 78.65 |
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 27.48 | 71.65 |
| GSMUA_Achr9P31020_001 | Banana | extracellular, vacuole | 61.29 | 68.04 |
| VIT_07s0005g00610.t01 | Wine grape | vacuole | 57.83 | 65.14 |
| KRH69283 | Soybean | plasma membrane | 55.56 | 63.44 |
| KRH31863 | Soybean | endoplasmic reticulum | 55.32 | 63.25 |
| KRH16759 | Soybean | mitochondrion, nucleus | 13.14 | 63.22 |
| AT3G53760.1 | Thale cress | vacuole | 55.44 | 62.28 |
| CDX78203 | Canola | extracellular, vacuole | 55.2 | 62.1 |
| CDX73526 | Canola | extracellular, vacuole | 55.08 | 61.96 |
| Solyc09g075190.2.1 | Tomato | extracellular, plasma membrane | 54.72 | 61.15 |
| Bra007026.1-P | Field mustard | golgi, nucleus, plasma membrane | 53.05 | 44.4 |
| Zm00001d025793_P001 | Maize | cytosol | 14.7 | 17.2 |
| Zm00001d020664_P016 | Maize | cytosol | 15.65 | 15.39 |
Protein Annotations
| Gene3D:1.20.120.1900 | EntrezGene:100381625 | MapMan:20.1.2.1.4 | UniProt:A0A1D6LZ80 | ProteinID:AQK84394.1 | InterPro:GCP |
| GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005819 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009624 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0040007 |
| GO:GO:0043015 | GO:GO:0043622 | PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF27 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00084461D7 | EnsemblPlantsGene:Zm00001d037593 | EnsemblPlants:Zm00001d037593_P004 | EnsemblPlants:Zm00001d037593_T004 | : |
Description
Gamma-tubulin complex component 4
Coordinates
chr6:-:130757943..130781728
Molecular Weight (calculated)
95615.9 Da
IEP (calculated)
8.936
GRAVY (calculated)
-0.143
Length
837 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHELLLALL GFTGDFVLDV SLPRRRAASQ DAGEDGNGDG EVGPSFRLAP DLTFLQPSER TAIERLISLG FYYRELNRFA TESRDLSWIQ SSIDVSSPHS
101: DNTQKGKVRK GSVYRRAIAN GITEILSVYR SAVLQVEQNL LSDPLPILAT VTHGLNKYTL YYGLYFSYVF GYYLLAFTIV VAALNYSLKS FCLHCMSLLW
201: KSSIKTSRVA SFLIFCTNGA IVGFQNCKAA FRVTLQCVLN SLAYAPNRGS LFIHFLFIVF KKDRLLWHGH QVMFNQLTSW MVYGILQDQY SEFFIRRSTC
301: LQGSSCYFVP VFDVSFLSAF LIFIFRQDDR DVENESSQRD VSDKLKQKLA KDTSLASWHT GFHVSLDMLP EYIHMRIAES ILFAGKAIRV LRNPSPSATL
401: QDPVIRTVGS HGMQSSVGGS GVPKELANFS NIRAEELLPQ AEADKIDSML KELKHSSEFH KRPFESAVGS IRTIAANHLW QLVVVRADLN GHLKALKDYF
501: LLAKGDFFQC FLEESRQLMR LPPRQSTAEA DLMIPFQLAA LKTIGEEDKY FTRVSLRMLS YGMKSSTSQK DLQKPNASEL PSQGKAASEL TLDGWDSIAL
601: EYSIDWPLQL FFTPDVLSKY RKVFQYLIRL KRTQMELEKS WAAVMHKDHA DFSDYCKDRK NNSATQLRRQ RSKPLWRVRE HMAFLIRNLQ FYIQVDVIES
701: QWNVLQSHVQ DSHDFTELVS FHQEYLSALV SQSFLDIGSV SRILDSIMKL CLQFCWSIEQ YETRPNISEI DHITEEFNKK SNSLYTILRS SRLAGSQRAP
801: FLRQFLMRLN FNSFFETTAR GVMNSGRLRP ITAGAQL
101: DNTQKGKVRK GSVYRRAIAN GITEILSVYR SAVLQVEQNL LSDPLPILAT VTHGLNKYTL YYGLYFSYVF GYYLLAFTIV VAALNYSLKS FCLHCMSLLW
201: KSSIKTSRVA SFLIFCTNGA IVGFQNCKAA FRVTLQCVLN SLAYAPNRGS LFIHFLFIVF KKDRLLWHGH QVMFNQLTSW MVYGILQDQY SEFFIRRSTC
301: LQGSSCYFVP VFDVSFLSAF LIFIFRQDDR DVENESSQRD VSDKLKQKLA KDTSLASWHT GFHVSLDMLP EYIHMRIAES ILFAGKAIRV LRNPSPSATL
401: QDPVIRTVGS HGMQSSVGGS GVPKELANFS NIRAEELLPQ AEADKIDSML KELKHSSEFH KRPFESAVGS IRTIAANHLW QLVVVRADLN GHLKALKDYF
501: LLAKGDFFQC FLEESRQLMR LPPRQSTAEA DLMIPFQLAA LKTIGEEDKY FTRVSLRMLS YGMKSSTSQK DLQKPNASEL PSQGKAASEL TLDGWDSIAL
601: EYSIDWPLQL FFTPDVLSKY RKVFQYLIRL KRTQMELEKS WAAVMHKDHA DFSDYCKDRK NNSATQLRRQ RSKPLWRVRE HMAFLIRNLQ FYIQVDVIES
701: QWNVLQSHVQ DSHDFTELVS FHQEYLSALV SQSFLDIGSV SRILDSIMKL CLQFCWSIEQ YETRPNISEI DHITEEFNKK SNSLYTILRS SRLAGSQRAP
801: FLRQFLMRLN FNSFFETTAR GVMNSGRLRP ITAGAQL
001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
Arabidopsis Description
GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.