Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 32.63 | 76.64 |
| VIT_07s0005g00610.t01 | Wine grape | vacuole | 73.21 | 74.29 |
| EES19050 | Sorghum | extracellular, vacuole | 73.08 | 73.27 |
| TraesCS1A01G095200.1 | Wheat | extracellular, vacuole | 71.88 | 72.46 |
| HORVU1Hr1G022100.2 | Barley | extracellular, vacuole | 71.49 | 72.06 |
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 71.35 | 71.93 |
| TraesCS1D01G103700.1 | Wheat | extracellular, vacuole | 71.22 | 71.79 |
| Os05t0154500-01 | Rice | extracellular, vacuole | 71.09 | 71.09 |
| KRH31863 | Soybean | endoplasmic reticulum | 67.51 | 69.54 |
| KRH69283 | Soybean | plasma membrane | 67.51 | 69.44 |
| AT3G53760.1 | Thale cress | vacuole | 68.04 | 68.86 |
| Solyc09g075190.2.1 | Tomato | extracellular, plasma membrane | 67.9 | 68.36 |
| CDX78203 | Canola | extracellular, vacuole | 67.37 | 68.28 |
| CDX73526 | Canola | extracellular, vacuole | 66.98 | 67.88 |
| KRH16759 | Soybean | mitochondrion, nucleus | 14.59 | 63.22 |
| Zm00001d037593_P004 | Maize | plasma membrane | 68.04 | 61.29 |
| Bra007026.1-P | Field mustard | golgi, nucleus, plasma membrane | 64.19 | 48.4 |
| GSMUA_Achr5P24280_001 | Banana | cytosol | 18.83 | 20.06 |
| GSMUA_Achr10P... | Banana | cytosol | 16.18 | 19.3 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 15.92 | 19.08 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.4 | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005815 | GO:GO:0005819 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009624 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0040007 | GO:GO:0043015 | GO:GO:0043622 | EnsemblPlantsGene:GSMUA_Achr9G31020_001 | EnsemblPlants:GSMUA_Achr9P31020_001 | EnsemblPlants:GSMUA_Achr9T31020_001 |
| UniProt:M0U509 | PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF27 | UniParc:UPI0002950AB5 | : |
Description
Gamma-tubulin complex component 4 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G31020_001]
Coordinates
chr9:+:34070995..34090068
Molecular Weight (calculated)
87002.9 Da
IEP (calculated)
6.938
GRAVY (calculated)
-0.219
Length
754 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHELLLALL GFTGDFVIDE REQAETLGLG AADNPLHQFP DEPTFRLAPD LSFLHPSERN VIQRLISLGF YYRELDHFAT ISRNLSFIQS TKDFSLPHSP
101: ELLKGKPRKG SVYRRAIANG IVEILSVYRA AVLQVEQNLL SDPLPILATV TQGLNKFEVL LPPLYELIVE IEREDIRGGQ LLNLLHKRCH CGVPELQACI
201: QRLLWHGHQV MYNQLTYWMV YGILQDQHGE FFIQRQDRKT EGHELSHLDD ITNLMQKSTD DGALTDWHLG FHISLEMLPE YINMRVAESI LFAGKAVKVL
301: RNPTSSFRLQ ESSVRQSVLK GSCRVQGFLG TFGLEREIPQ SSNLIAEDLL PQSEADKIDA MLKELKQSSE FQKRLFESAI SSIRTIAANH LWQLVVVRAD
401: LNGHLKALKD YFLLAKGDFF QCFLEESRQL MRLPPRQSTA EADLMVPFQL AALKTVSDED KYFPRVSLRM PSFGINMTAT QVDFPKLKSN ADGNLVPLQG
501: RTLVESSLDG WDGVALEYSV DWPLQLFFTQ EVISKYRKVF QYLIRLKRTQ MELEKSWAAV MHQDHIDFAN NRRDCKNNSI PQHRRRRSLP MWRVREHMTF
601: LIRNLQFYIQ VDVIESQWNV LQAHLQDSRD FTELVGFHQE YLAALISQSF LDIGSVSRIL DSIMKLCLQF CWIIEQYESN PNISELEHIT EEFNKKSNSL
701: YTILRSSRLA GSQRAPFLRQ FLMRLNFNSF FEQTARGVLN VVKARPAIPF VQQE
101: ELLKGKPRKG SVYRRAIANG IVEILSVYRA AVLQVEQNLL SDPLPILATV TQGLNKFEVL LPPLYELIVE IEREDIRGGQ LLNLLHKRCH CGVPELQACI
201: QRLLWHGHQV MYNQLTYWMV YGILQDQHGE FFIQRQDRKT EGHELSHLDD ITNLMQKSTD DGALTDWHLG FHISLEMLPE YINMRVAESI LFAGKAVKVL
301: RNPTSSFRLQ ESSVRQSVLK GSCRVQGFLG TFGLEREIPQ SSNLIAEDLL PQSEADKIDA MLKELKQSSE FQKRLFESAI SSIRTIAANH LWQLVVVRAD
401: LNGHLKALKD YFLLAKGDFF QCFLEESRQL MRLPPRQSTA EADLMVPFQL AALKTVSDED KYFPRVSLRM PSFGINMTAT QVDFPKLKSN ADGNLVPLQG
501: RTLVESSLDG WDGVALEYSV DWPLQLFFTQ EVISKYRKVF QYLIRLKRTQ MELEKSWAAV MHQDHIDFAN NRRDCKNNSI PQHRRRRSLP MWRVREHMTF
601: LIRNLQFYIQ VDVIESQWNV LQAHLQDSRD FTELVGFHQE YLAALISQSF LDIGSVSRIL DSIMKLCLQF CWIIEQYESN PNISELEHIT EEFNKKSNSL
701: YTILRSSRLA GSQRAPFLRQ FLMRLNFNSF FEQTARGVLN VVKARPAIPF VQQE
001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
Arabidopsis Description
GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.