Factsheet for PGSC0003DMT400081381

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16759	Soybean	mitochondrion, nucleus	34.89	64.37
Solyc09g075190.2.1	Tomato	extracellular, plasma membrane	98.44	42.19
KRH31863	Soybean	endoplasmic reticulum	79.44	34.84
KRH69283	Soybean	plasma membrane	79.13	34.65
VIT_07s0005g00610.t01	Wine grape	vacuole	78.5	33.92
GSMUA_Achr9P31020_001	Banana	extracellular, vacuole	76.64	32.63
AT3G53760.1	Thale cress	vacuole	73.83	31.81
CDX78203	Canola	extracellular, vacuole	72.9	31.45
CDX73526	Canola	extracellular, vacuole	72.27	31.18
EES19050	Sorghum	extracellular, vacuole	71.96	30.72
Os05t0154500-01	Rice	extracellular, vacuole	70.09	29.84
HORVU1Hr1G022100.2	Barley	extracellular, vacuole	69.16	29.68
TraesCS1B01G123000.1	Wheat	extracellular, vacuole	69.16	29.68
TraesCS1D01G103700.1	Wheat	extracellular, vacuole	68.85	29.55
TraesCS1A01G095200.1	Wheat	extracellular, vacuole	68.85	29.55
Zm00001d037593_P004	Maize	plasma membrane	71.65	27.48
Bra007026.1-P	Field mustard	golgi, nucleus, plasma membrane	72.9	23.4
PGSC0003DMT400050760	Potato	cytosol	18.69	8.49
PGSC0003DMT400007029	Potato	nucleus	18.38	6.31

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.4	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005815	GO:GO:0005819	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0008150
GO:GO:0009506	GO:GO:0009605	GO:GO:0009607	GO:GO:0009624	GO:GO:0009987	GO:GO:0016043
GO:GO:0043015	GO:GO:0043622	UniProt:M1D4N5	PFAM:PF04130	EnsemblPlantsGene:PGSC0003DMG400031813	PGSC:PGSC0003DMG400031813
EnsemblPlants:PGSC0003DMT400081381	PANTHER:PTHR19302	PANTHER:PTHR19302:SF27	UniParc:UPI000294AF23	SEG:seg	:

Description

Gamma-tubulin complex component [Source:PGSC_GENE;Acc:PGSC0003DMG400031813]

Coordinates

chr9:-:52755447..52760670

Molecular Weight (calculated)

37184.7 Da

IEP (calculated)

9.314

GRAVY (calculated)

-0.298

Length

321 amino acids

Sequence
(BLAST)

001: MRLPPRQSTA EADLMVPFQL AALKTIGEED RYFSRVSLRM PSFGIALKPS PVDLPKVKVN KDGDSVGHPD ASLEVSLDGW DGISLEYSID WPLQLFVTPE
101: VLSKYQRIFQ YLLRLKRTQM ELEKSWAFAM HQDHIDFAKL RNDSRKSSVP QHRRQRLRPM WHVREHMAFL IRNLQFYIQV DVIESQWNVL QSHIQNSQDF
201: TELVGFHQEY LAALISQSFL DIGSVSRILD GIMKLCLQFC WKIENDESNR TTSELGHIAE EFNKKSNSLY TILRSSRLAG SQRAPFLRQF LLRLNFNSFF
301: EATARGVLNV VNPRPSVSVL Q

Best Arabidopsis Sequence Match ( AT3G53760.1 )
(BLAST)

001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL

Arabidopsis Description

GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.