CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 1
extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73526	Canola	extracellular, vacuole	99.6	99.6
AT3G53760.1	Thale cress	vacuole	92.61	92.48
VIT_07s0005g00610.t01	Wine grape	vacuole	75.13	75.24
KRH31863	Soybean	endoplasmic reticulum	72.45	73.63
KRH69283	Soybean	plasma membrane	72.45	73.53
PGSC0003DMT400081381	Potato	cytosol, nucleus, plastid	31.45	72.9
Solyc09g075190.2.1	Tomato	extracellular, plasma membrane	70.3	69.83
Bra007026.1-P	Field mustard	golgi, nucleus, plasma membrane	93.28	69.4
GSMUA_Achr9P31020_001	Banana	extracellular, vacuole	68.28	67.37
TraesCS1B01G123000.1	Wheat	extracellular, vacuole	65.86	65.51
EES19050	Sorghum	extracellular, vacuole	66.13	65.43
HORVU1Hr1G022100.2	Barley	extracellular, vacuole	65.59	65.24
TraesCS1A01G095200.1	Wheat	extracellular, vacuole	65.59	65.24
TraesCS1D01G103700.1	Wheat	extracellular, vacuole	65.46	65.11
Os05t0154500-01	Rice	extracellular, vacuole	65.46	64.59
KRH16759	Soybean	mitochondrion, nucleus	14.78	63.22
Zm00001d037593_P004	Maize	plasma membrane	62.1	55.2
CDY16926	Canola	cytosol	14.38	20.5
CDY14071	Canola	cytosol	15.99	19.44
CDX82078	Canola	mitochondrion	3.09	19.33
CDY14072	Canola	cytosol	4.57	18.68
CDX70761	Canola	nucleus	16.94	18.58
CDX78748	Canola	nucleus	17.2	18.47
CDY38427	Canola	cytosol	13.98	18.12
CDX98945	Canola	cytosol	2.42	17.65
CDY04999	Canola	cytosol	16.8	15.3
CDX70079	Canola	cytosol	10.62	12.29

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.4	GO:A0A078CSS6	EnsemblPlants:CDX78203	ProteinID:CDX78203	ProteinID:CDX78203.1
InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005815	GO:GO:0005856	GO:GO:0007020
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	GO:GO:0090063	EnsemblPlantsGene:GSBRNA2T00129517001
PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF27	SignalP:SignalP-noTM	UniParc:UPI0004EED632	SEG:seg

Description

BnaA09g33980D

Coordinates

chrLK031814:-:1697393..1701595

Molecular Weight (calculated)

85882.9 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.326

Length

744 amino acids

Sequence
(BLAST)

001: MLHELLLALL GFTGDLIVDE REQLKTLGLD SPLSDESTFK LAPDISFIQP SERDLIERLI KLGFYYRELD RFANKSRNLS WIRSVTSVHP LERADELSKQ
101: SSSSGEKKPS VYRRAIANGI VEILSVYRSA VLHIEQKLLA ETTPILATVT QGLNKFFVLF PPLYEVVLEI ERDDIRGGQL LNVLNKRCHC GVPELRACLQ
201: RLLWHGHQVM YNQLAAWMVY GILQDPHEEF FIKRQEDGDL DHRSSQEEIS EKLARTSVHE TSLTDWHSGF HISLDMLPDH IPMRLGESVL FAGKAIRVLR
301: NPSPAFQFQK DKSFQQTMRG SQRIRGFMHS DFSEKETELD ADLTGEELLP QSEADKIEAM LKDLKESSEF HKRSFECTVD SVRAIAASHL WQLVVVRADL
401: NGHLKALKDY FLLEKGDFFQ CFLEESRQLM RFPPRQSTGE ADLMVPFQLA ATKTIGEEDK YFSRVSLRLP SFGVTVRSSQ ADLARSKLAL TGKANLTSDT
501: SVDGWDAIAL EYSVDWPMQL FFTQEVLSKY LKVFQYLIRL KRTQMELEKS WASVMHQDHM DFAQHRKDGT KESISQQRRQ GIRPMWRVRE HMAFLIRNLQ
601: FYIQVDVIES QWKVLQTHIE DSQDFTELVG FHQEYLSALI SQSFLDIGAV SRILDSIMKL CLQFCWNIEN HESNPNTSEL ENISEEFNQK SNSLYTILRS
701: SKLAGSQRAP FLRRFLLRLN FNSFYEATTR GLLNVVRQRP ALPL

Best Arabidopsis Sequence Match ( AT3G53760.1 )
(BLAST)

001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL

Arabidopsis Description

GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.