Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 97.59 | 97.59 |
| TraesCS1A01G095200.1 | Wheat | extracellular, vacuole | 96.12 | 96.12 |
| TraesCS1D01G103700.1 | Wheat | extracellular, vacuole | 95.45 | 95.45 |
| EES19050 | Sorghum | extracellular, vacuole | 87.3 | 86.84 |
| Os05t0154500-01 | Rice | extracellular, vacuole | 86.76 | 86.07 |
| Zm00001d037593_P004 | Maize | plasma membrane | 80.21 | 71.68 |
| GSMUA_Achr9P31020_001 | Banana | extracellular, vacuole | 72.06 | 71.49 |
| VIT_07s0005g00610.t01 | Wine grape | vacuole | 69.25 | 69.72 |
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 29.68 | 69.16 |
| KRH69283 | Soybean | plasma membrane | 65.11 | 66.44 |
| KRH31863 | Soybean | endoplasmic reticulum | 64.97 | 66.39 |
| AT3G53760.1 | Thale cress | vacuole | 65.37 | 65.64 |
| CDX78203 | Canola | extracellular, vacuole | 65.24 | 65.59 |
| CDX73526 | Canola | extracellular, vacuole | 64.84 | 65.19 |
| Solyc09g075190.2.1 | Tomato | extracellular, plasma membrane | 64.57 | 64.49 |
| KRH16759 | Soybean | mitochondrion, nucleus | 14.04 | 60.34 |
| Bra007026.1-P | Field mustard | golgi, nucleus, plasma membrane | 62.43 | 46.7 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 17.65 | 18.62 |
| HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 17.91 | 17.96 |
| HORVU6Hr1G020090.2 | Barley | plastid | 17.65 | 14.72 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.4 | UniProt:A0A287EVW5 | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005819 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 |
| GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009624 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0040007 | GO:GO:0043015 | GO:GO:0043622 | EnsemblPlantsGene:HORVU1Hr1G022100 | EnsemblPlants:HORVU1Hr1G022100.2 |
| PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF27 | SignalP:SignalP-noTM | UniParc:UPI000B4642A7 | SEG:seg |
Description
Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:A0A287EVW5]
Coordinates
chrchr1H:-:92414663..92422343
Molecular Weight (calculated)
85253.2 Da
IEP (calculated)
7.387
GRAVY (calculated)
-0.253
Length
748 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHELLLALL GFTGDFVLDN SSAPRRPEPA EAGGAADGDA GPAFRLAPDL TFLQPSERSA IERLISLGFY YRELNRFATE SRDLSWIQSS VDVSSPNADI
101: TLKGKGRKGS AYRRAIGNGI AEILSVYRSA VLQVEQNLLS DPLPILATVT HGLNKFEVLL PPLYELVMEI EQKDIKGGQL LNLLHKRCHC GVPELQSCIQ
201: RLLWHGHQVM FNQLTSWMVY GILQDQYHEF FIRRQVDRDE ENESAQSDVA DKFAQKLARD TSLTSWHSGF HVSLDMLPEY IHMRVAESIL FAGKAIRVLR
301: NPSPGATLLE PTNQSQTLKG SHRMQSFIGC SGALKELPNF SNISAEELLP QAEADKVDAM LKQLKHASEF HKRLFESAVS SIRTIAANHL WQLVVVRADL
401: NGHLKALKDY FLLAKGDFFQ CFLEESRQLM RLPPRQSTAE ADLIVPFQLA ALKTIGDEDK YFTRVSLRMP LFGMKSSTSQ KDLQKSNTSD LSLQGKASSE
501: LALDGWHSIA LEYSVDWPLQ LFFTPDVLSK YRKVFQYLIR LKRTQMELEK SWTAVMHQDH VDFSDYCKDQ KNSSATQLRR LRTKPFWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWNVLQTHV QDSHDFTELV TFHQDYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWSIE QYETGANMFE IDHITEEFNK KSNSLYTILR
701: SSRLAGSQRA PFLRQFLMRL NFNSFFETTA RGVMNSGRLR PGTASTQL
101: TLKGKGRKGS AYRRAIGNGI AEILSVYRSA VLQVEQNLLS DPLPILATVT HGLNKFEVLL PPLYELVMEI EQKDIKGGQL LNLLHKRCHC GVPELQSCIQ
201: RLLWHGHQVM FNQLTSWMVY GILQDQYHEF FIRRQVDRDE ENESAQSDVA DKFAQKLARD TSLTSWHSGF HVSLDMLPEY IHMRVAESIL FAGKAIRVLR
301: NPSPGATLLE PTNQSQTLKG SHRMQSFIGC SGALKELPNF SNISAEELLP QAEADKVDAM LKQLKHASEF HKRLFESAVS SIRTIAANHL WQLVVVRADL
401: NGHLKALKDY FLLAKGDFFQ CFLEESRQLM RLPPRQSTAE ADLIVPFQLA ALKTIGDEDK YFTRVSLRMP LFGMKSSTSQ KDLQKSNTSD LSLQGKASSE
501: LALDGWHSIA LEYSVDWPLQ LFFTPDVLSK YRKVFQYLIR LKRTQMELEK SWTAVMHQDH VDFSDYCKDQ KNSSATQLRR LRTKPFWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWNVLQTHV QDSHDFTELV TFHQDYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWSIE QYETGANMFE IDHITEEFNK KSNSLYTILR
701: SSRLAGSQRA PFLRQFLMRL NFNSFFETTA RGVMNSGRLR PGTASTQL
001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
Arabidopsis Description
GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.