Factsheet for HORVU5Hr1G066810.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G114640.1
HORVU5Hr1G114660.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	HORVU5Hr1G114640.1	AT1G73790.1	22404201
AT5G06680.1	HORVU5Hr1G114660.1	AT1G73790.1	22404201
AT5G06680.1	HORVU5Hr1G114640.1	AT1G73790.1	22427335
AT5G06680.1	HORVU5Hr1G114660.1	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G230400.1	Wheat	cytosol	96.19	82.67
TraesCS5D01G235900.1	Wheat	cytosol	95.63	82.18
TraesCS5A01G232100.1	Wheat	cytosol	96.05	78.1
Os09t0446200-01	Rice	cytosol, nucleus	92.52	78.0
KXG35736	Sorghum	cytosol	91.4	77.7
GSMUA_Achr10P...	Banana	cytosol	69.11	77.53
HORVU6Hr1G020090.2	Barley	plastid	95.63	75.59
GSMUA_Achr8P22770_001	Banana	cytosol	66.01	74.4
Zm00001d020664_P016	Maize	cytosol	88.29	73.56
Bra028722.1-P	Field mustard	cytosol	60.51	70.21
CDY14071	Canola	cytosol	60.51	70.1
AT5G06680.1	Thale cress	cytosol	68.83	58.23
CDY04999	Canola	cytosol	66.85	58.02
VIT_08s0007g06730.t01	Wine grape	cytosol	68.97	57.26
KRG95411	Soybean	cytosol	65.59	55.23
KRH67085	Soybean	cytosol	65.59	55.09
CDX70079	Canola	cytosol	45.56	50.23
Bra009216.1-P	Field mustard	cytosol	45.56	50.23
CDX98945	Canola	cytosol	7.19	50.0
PGSC0003DMT400007029	Potato	nucleus	65.59	49.73
Solyc09g009140.2.1	Tomato	nucleus	65.59	49.73
HORVU2Hr1G086820.13	Barley	cytosol, plastid	19.75	18.77
HORVU1Hr1G022100.2	Barley	extracellular, vacuole	18.62	17.65

Protein Annotations

MapMan:20.1.2.1.3	UniProt:A0A287RL18	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0043015	EnsemblPlantsGene:HORVU5Hr1G066810	EnsemblPlants:HORVU5Hr1G066810.2	PFAM:PF04130	PANTHER:PTHR19302
PANTHER:PTHR19302:SF14	UniParc:UPI000B470197	SEG:seg	:	:	:

Description

Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:A0A287RL18]

Coordinates

chrchr5H:-:509431337..509435654

Molecular Weight (calculated)

79974.5 Da

IEP (calculated)

6.462

GRAVY (calculated)

-0.112

Length

709 amino acids

Sequence
(BLAST)

001: PNLPAAPPSA AGGKQASRAP GTPAGGVLLV SKDPDNIREI ALREYTELVL DETEVSEAAL VRDVLYACQG IDGRYVRYDK SSDAYDLPDG VRVPRSTRTL
101: VRKLCELGWL FRKVRGFISD NVSRLPSHAA TEVGTVAQAF CSALQEELSD YYKLLAVLES YSLNPIPTPG SDSGVSGNYL SLRRLIVWLA EPAVRMRLMA
201: VLVDGCRGLR GGGMAGAIHG HAQHGDPMVQ DFMARLLRRV CSPLFEMVRS WVLEGELEDL FGEFFIVGQP VKAESLWREG YLIQSDMLPS FISPVLAQRI
301: LRTGKSINFL RVCCDDNGWA EAATEAAAYV GTTTSRGGLG YGQIDALEAL VVEAAKRIDQ RLMDVIHKRY RFKDHCLAIK RYLLLGQGDF VQYLMDVVGP
401: ELSEPANRIS SFHLAGLLET AIRASDAQYD DRDILDRIKV KMMDHGDGDV GWDVFSLEYD ARVPLDTVFT ASVMKMYLKI FNFLWKLKRV DHSLTGVWKT
501: MKPNCIVSSP FYKEGTSIRL QFVSVLRKCQ VLFNEMNHFV TNFQYYIMFE VLEISWARFS EEMDSAKDLD DLLMGHDKYL TSIVEKSLLG ERSLGILRNL
601: FALFDIILQF RSHADRWFER IYELQLRGKP KTKSKETGSW LEGGRKAMIQ LAGELFQKMG EDLDSIAKDY TASLDSFISQ LPLQQHVDLK FLLFRLDFTE
701: YYSRVSSNK

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.