Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g097400.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06680.1 | Solyc03g097400.1.1 | AT1G73790.1 | 22404201 |
| AT5G06680.1 | Solyc03g097400.1.1 | AT1G73790.1 | 22427335 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007029 | Potato | nucleus | 97.75 | 97.75 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 68.88 | 75.41 |
| CDY14071 | Canola | cytosol | 47.06 | 71.9 |
| Bra028722.1-P | Field mustard | cytosol | 46.84 | 71.69 |
| AT5G06680.1 | Thale cress | cytosol | 63.21 | 70.53 |
| KRH67085 | Soybean | cytosol | 62.46 | 69.19 |
| KRG95411 | Soybean | cytosol | 62.03 | 68.88 |
| CDY04999 | Canola | cytosol | 57.43 | 65.73 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 49.73 | 65.59 |
| GSMUA_Achr10P... | Banana | cytosol | 44.17 | 65.35 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 43.42 | 64.55 |
| Bra009216.1-P | Field mustard | cytosol | 44.17 | 64.23 |
| CDX70079 | Canola | cytosol | 44.06 | 64.07 |
| KXG35736 | Sorghum | cytosol | 56.04 | 62.83 |
| TraesCS6D01G100700.1 | Wheat | cytosol | 54.33 | 62.56 |
| TraesCS6B01G140000.1 | Wheat | cytosol | 54.55 | 62.42 |
| TraesCS6A01G111800.1 | Wheat | cytosol | 54.12 | 62.32 |
| TraesCS5B01G230400.1 | Wheat | cytosol | 54.76 | 62.06 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 55.62 | 61.83 |
| TraesCS5D01G235900.1 | Wheat | cytosol | 54.55 | 61.82 |
| Zm00001d020664_P016 | Maize | cytosol | 55.94 | 61.46 |
| TraesCS5A01G232100.1 | Wheat | cytosol | 54.87 | 58.83 |
| CDX98945 | Canola | cytosol | 6.31 | 57.84 |
| HORVU6Hr1G020090.2 | Barley | plastid | 55.4 | 57.75 |
| Solyc02g081460.2.1 | Tomato | cytosol | 15.08 | 19.94 |
| Solyc09g075190.2.1 | Tomato | extracellular, plasma membrane | 13.48 | 16.82 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.3 | ncoils:Coil | InterPro:GCP | GO:GO:0000003 | GO:GO:0000226 |
| GO:GO:0000922 | GO:GO:0000923 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008275 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031122 | GO:GO:0043015 | GO:GO:0051011 | GO:GO:0051321 |
| GO:GO:0051415 | GO:GO:0090307 | UniProt:K4CQU3 | PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF14 |
| EnsemblPlantsGene:Solyc09g009140.2 | EnsemblPlants:Solyc09g009140.2.1 | UniParc:UPI000276C2E1 | SEG:seg | : | : |
Description
Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:K4CQU3]
Coordinates
chr9:+:2480875..2483999
Molecular Weight (calculated)
105437.0 Da
IEP (calculated)
8.521
GRAVY (calculated)
-0.291
Length
935 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDRRALD LVKELVHRLL STSTPPSTAD SHQSTILNPN PVIPSDQQYH QALRYAIRIL SSRMTPSIAA DESAMVESIK RRLATQGKSS DALTFADVYT
101: KFSLKTGQGS VRNKWAVLYL LKTVSEDRKI QKHQSASVAP NGFLSSALSG GLPELVGSES NRNFGLRNDS SKVLNNVQGN MDNSKDSRGL VGKLGKMEKG
201: YSDRSLSDDF QSLNCVGDNS RVLRGKGEVG KGWSGGVLMV SKDPENLRDM AYKEFVNLSK EENEVSEDVL VRDVLYACQG IDGKYVKYDK NEDGYVLPDW
301: MKVPRATRSV VRKLCELGWL FRKVKGYISD SMNQFPAQDV GTVGQAFCAA LQDELSEYYK LLAVLEGQAM NPIPLGSEGA CSGNYISLRR LTVWFAEPIV
401: KMRLMAVLVD NCKSLKGGAM AGAIHMHAQH GDPLVNDFMK RLLRRVCSPL FEMVRRWVLE GELEDIFAEF FIVSQPVKDE SLWREGYRLH AAMLPAFISQ
501: SLAKQILRTG KSINFLRVCC DDRGWADAAT EAAAAVGTTT TRGSLGYGET DALESLVTEA AKRIDKHLLE LMHKRYKFKE HCLAIKRYLL LGQGDFVQYL
601: MDIVGPELSE PANTISSFKL ATLLESAITS SNAQYDGCDI RARLRVKMMP HKTGDRGWDV FSLEYDAGVP LNTIFTESVM TRYIRVFNFL WKLRRVEHAL
701: TGTWKTMKPN CITSHFFSKL PQAVKSQLIL TSRKCQVLWD EMNHFVSNLQ YYIMFEVLEV SWSNLVKEME LSKDLDDLLA AHEKYLFAIL EKSLLGERSQ
801: ELNKTLFVLF DLILRFRSLA DRLYEGINEL QSRTSDTSIN SRDKVKSRGK SNDKTSEPGS WLGEGRKALT QRAGEFLKNM GNDMDVIGKD YTTIFEGFIS
901: QLPVQQHVDL KFLMFRLNFT EFYSQIQPIT RGKLF
101: KFSLKTGQGS VRNKWAVLYL LKTVSEDRKI QKHQSASVAP NGFLSSALSG GLPELVGSES NRNFGLRNDS SKVLNNVQGN MDNSKDSRGL VGKLGKMEKG
201: YSDRSLSDDF QSLNCVGDNS RVLRGKGEVG KGWSGGVLMV SKDPENLRDM AYKEFVNLSK EENEVSEDVL VRDVLYACQG IDGKYVKYDK NEDGYVLPDW
301: MKVPRATRSV VRKLCELGWL FRKVKGYISD SMNQFPAQDV GTVGQAFCAA LQDELSEYYK LLAVLEGQAM NPIPLGSEGA CSGNYISLRR LTVWFAEPIV
401: KMRLMAVLVD NCKSLKGGAM AGAIHMHAQH GDPLVNDFMK RLLRRVCSPL FEMVRRWVLE GELEDIFAEF FIVSQPVKDE SLWREGYRLH AAMLPAFISQ
501: SLAKQILRTG KSINFLRVCC DDRGWADAAT EAAAAVGTTT TRGSLGYGET DALESLVTEA AKRIDKHLLE LMHKRYKFKE HCLAIKRYLL LGQGDFVQYL
601: MDIVGPELSE PANTISSFKL ATLLESAITS SNAQYDGCDI RARLRVKMMP HKTGDRGWDV FSLEYDAGVP LNTIFTESVM TRYIRVFNFL WKLRRVEHAL
701: TGTWKTMKPN CITSHFFSKL PQAVKSQLIL TSRKCQVLWD EMNHFVSNLQ YYIMFEVLEV SWSNLVKEME LSKDLDDLLA AHEKYLFAIL EKSLLGERSQ
801: ELNKTLFVLF DLILRFRSLA DRLYEGINEL QSRTSDTSIN SRDKVKSRGK SNDKTSEPGS WLGEGRKALT QRAGEFLKNM GNDMDVIGKD YTTIFEGFIS
901: QLPVQQHVDL KFLMFRLNFT EFYSQIQPIT RGKLF
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.