CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68212
CDX73014
CDY11089
CDY60144

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	CDX68212	AT1G73790.1	22404201
AT5G06680.1	CDX73014	AT1G73790.1	22404201
AT5G06680.1	CDY11089	AT1G73790.1	22404201
AT5G06680.1	CDY60144	AT1G73790.1	22404201
AT5G06680.1	CDX68212	AT1G73790.1	22427335
AT5G06680.1	CDX73014	AT1G73790.1	22427335
AT5G06680.1	CDY11089	AT1G73790.1	22427335
AT5G06680.1	CDY60144	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028722.1-P	Field mustard	cytosol	98.2	98.36
CDX98945	Canola	cytosol	12.25	73.53
CDY04999	Canola	cytosol	96.08	71.97
AT5G06680.1	Thale cress	cytosol	89.22	65.16
GSMUA_Achr10P...	Banana	cytosol	65.85	63.77
GSMUA_Achr8P22770_001	Banana	cytosol	64.38	62.64
HORVU5Hr1G066810.2	Barley	cytosol	70.1	60.51
CDX70079	Canola	cytosol	59.97	57.08
VIT_08s0007g06730.t01	Wine grape	cytosol	78.92	56.56
KRG95411	Soybean	cytosol	74.02	53.8
KRH67085	Soybean	cytosol	73.86	53.55
TraesCS6D01G100700.1	Wheat	cytosol	70.42	53.08
TraesCS6B01G140000.1	Wheat	cytosol	70.59	52.88
TraesCS6A01G111800.1	Wheat	cytosol	69.61	52.46
TraesCS5D01G235900.1	Wheat	cytosol	70.1	52.0
KXG35736	Sorghum	cytosol	70.75	51.92
TraesCS5B01G230400.1	Wheat	cytosol	69.77	51.76
Os09t0446200-01	Rice	cytosol, nucleus	69.93	50.89
Zm00001d020664_P016	Maize	cytosol	70.1	50.41
TraesCS5A01G232100.1	Wheat	cytosol	69.61	48.85
HORVU6Hr1G020090.2	Barley	plastid	70.26	47.94
PGSC0003DMT400007029	Potato	nucleus	71.9	47.06
Solyc09g009140.2.1	Tomato	nucleus	71.9	47.06
CDX82078	Canola	mitochondrion	5.07	26.05
CDY16926	Canola	cytosol	18.46	21.65
CDY14072	Canola	cytosol	6.21	20.88
CDY38427	Canola	cytosol	18.3	19.51
CDX70761	Canola	nucleus	21.57	19.47
CDX78748	Canola	nucleus	21.41	18.9
CDX73526	Canola	extracellular, vacuole	19.44	15.99
CDX78203	Canola	extracellular, vacuole	19.44	15.99

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.3	GO:A0A078FLZ1	UniProt:A0A078FLZ1	EnsemblPlants:CDY14071	ProteinID:CDY14071
ProteinID:CDY14071.1	ncoils:Coil	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0043015	GO:GO:0090063	EnsemblPlantsGene:GSBRNA2T00078606001	PFAM:PF04130	PANTHER:PTHR19302
PANTHER:PTHR19302:SF14	UniParc:UPI0004EED1B0	SEG:seg	:	:	:

Description

BnaC02g01880DGamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:A0A078FLZ1]

Coordinates

chrLK032040:-:284580..286486

Molecular Weight (calculated)

69678.1 Da

IEP (calculated)

7.226

GRAVY (calculated)

-0.110

Length

612 amino acids

Sequence
(BLAST)

001: MVRTLSELGW LFKKVKSFIS ESMVEDVGTV GQAFCAALQD ELSDYYKLLA VLEAQGMNPI PLVSESAGGS SSSYLSLRRL SVWFAEPKVK MRLMAVLVDK
101: CRVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDSFGEFF VVSHPVKVDL LWREGYNLHH GMLPSFISPS LAQRILRTGK
201: SINFLRVCCD DHGWADAASE AAAASGTTTR RGGIGYGETD ALEHLVAEAA KRIDKRLLDV LYERYKFKEH CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP
301: ANNISSFELA GFLEAAVRAS NAQYDDRDVL DRLKVKMMPH GSGDRGWDVF SLEYEARAPL DTVFTESVLS KYLRVFNFLW RLKRVEHALI GIWKTMKPNC
401: ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WCNFAKEMEA AKDLDDLLAA HEKYLNSIVG KSLLGEESQT IRKSLFVLFE
501: LILRFRSHAD RLYEGIYELQ IRTKEPGRER NKTQDSSSSW ISDGRKAITQ RAGEFLRSMS QDMDSIAKEY TTSLDAFLSL LPLQQSVDLK FLFFRLDFTE
601: FYSRLHSKGR ES

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.