Factsheet for Bra028722.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003829.1-P
Bra015965.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	Bra003829.1-P	AT1G73790.1	22404201
AT5G06680.1	Bra015965.1-P	AT1G73790.1	22404201
AT5G06680.1	Bra003829.1-P	AT1G73790.1	22427335
AT5G06680.1	Bra015965.1-P	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14071	Canola	cytosol	98.36	98.2
AT5G06680.1	Thale cress	cytosol	89.03	64.92
GSMUA_Achr10P...	Banana	cytosol	65.96	63.77
GSMUA_Achr8P22770_001	Banana	cytosol	64.48	62.64
HORVU5Hr1G066810.2	Barley	cytosol	70.21	60.51
Bra009216.1-P	Field mustard	cytosol	61.21	58.16
VIT_08s0007g06730.t01	Wine grape	cytosol	78.72	56.32
KRG95411	Soybean	cytosol	73.65	53.44
KRH67085	Soybean	cytosol	73.49	53.2
TraesCS6D01G100700.1	Wheat	cytosol	70.21	52.83
TraesCS6B01G140000.1	Wheat	cytosol	70.38	52.63
TraesCS6A01G111800.1	Wheat	cytosol	69.39	52.22
TraesCS5D01G235900.1	Wheat	cytosol	70.05	51.88
KXG35736	Sorghum	cytosol	70.54	51.68
TraesCS5B01G230400.1	Wheat	cytosol	69.72	51.64
Os09t0446200-01	Rice	cytosol, nucleus	69.72	50.65
Zm00001d020664_P016	Maize	cytosol	70.05	50.29
TraesCS5A01G232100.1	Wheat	cytosol	69.56	48.74
HORVU6Hr1G020090.2	Barley	plastid	70.05	47.71
PGSC0003DMT400007029	Potato	nucleus	71.85	46.95
Solyc09g009140.2.1	Tomato	nucleus	71.69	46.84
Bra006406.1-P	Field mustard	nucleus	17.84	17.99
Bra013980.1-P	Field mustard	cytosol	12.77	14.42
Bra007026.1-P	Field mustard	golgi, nucleus, plasma membrane	19.64	12.0

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.3	EnsemblPlantsGene:Bra028722	EnsemblPlants:Bra028722.1	EnsemblPlants:Bra028722.1-P	ncoils:Coil
InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856
GO:GO:0005874	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015
UniProt:M4EIV7	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI000254318B	SEG:seg

Description

AT5G06680 (E=4e-286) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding

Coordinates

chrA02:+:2379630..2381534

Molecular Weight (calculated)

69550.9 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.124

Length

611 amino acids

Sequence
(BLAST)

001: MVRTLSELGW LFKKVKSFIS ESMDEDVGTV GQAFCAALQD ELSDYYKLLA VLEAQGMNPI PLVSESAGGS SSYLSLRRLS VWFAEPKVKM RLMAVLVDKC
101: RVLRGGAMAG AIHLHAQHGD PLVHDFMMSL LRCVCSPLFE MVRSWVLEGE LEDSFGEFFV VSHPVKVDLL WREGYNLHHG MLPSFISPSL AQRILRTGKS
201: INFLRVCCDD HGWADAASEA AAASGTTTRR GGIGYGETDA LEHLVAEAAK RIDKRLLDVL YERYKFKEHC LAIKRYLLLG QGDFVQYLMD IVGPKLSEPA
301: NNISSFELAG FLEAAVRASN AQYDDRDVLD RLKVKMMPHG SGDRGWDVFS LEYEARAPLD TVFTESVLSK YLRVFNFLWR LKRVEHALIG IWKTMKPNCI
401: TSNSFAKLQS SVKLQLLSAL RRCQVLWNEM NHFVTNFQYY IMFEVLEVSW CNFAKEMEAA KDLDDLLAAH EKYLNSIVGK SLLGEESQTI RKSLFVLFEL
501: ILRFRSHADR LYEGIYELQI RTKEPGRERN KTQDSSSSWI SDGRKAITQR AGEFLQSMSQ DMDSIAKEYT TSLDAFLSLL PLQQSVDLKF LFFRLDFTEF
601: YSRLHSKGRE S

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.