Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006406.1-P | Field mustard | nucleus | 67.47 | 60.23 |
| CDY38427 | Canola | cytosol | 63.77 | 60.1 |
| AT5G17410.2 | Thale cress | nucleus, plastid | 73.01 | 58.17 |
| KRG89853 | Soybean | cytosol, extracellular, nucleus | 14.6 | 46.47 |
| VIT_14s0066g01030.t01 | Wine grape | cytosol | 58.41 | 45.01 |
| KRH07351 | Soybean | cytosol | 53.42 | 43.52 |
| KRH66204 | Soybean | cytosol, nucleus, peroxisome | 53.05 | 43.22 |
| KRG89851 | Soybean | cytosol | 36.78 | 43.07 |
| PGSC0003DMT400050760 | Potato | cytosol | 54.9 | 42.01 |
| Solyc02g081460.2.1 | Tomato | cytosol | 54.9 | 42.01 |
| GSMUA_Achr5P24280_001 | Banana | cytosol | 52.68 | 40.25 |
| Os04t0501700-01 | Rice | nucleus | 52.87 | 40.23 |
| OQU81893 | Sorghum | cytosol | 52.31 | 39.92 |
| TraesCS2D01G355300.1 | Wheat | cytosol | 52.31 | 39.92 |
| TraesCS2A01G356400.1 | Wheat | cytosol | 52.13 | 39.77 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 52.13 | 39.77 |
| Zm00001d025793_P001 | Maize | cytosol | 52.13 | 39.44 |
| HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 52.13 | 37.8 |
| Bra028722.1-P | Field mustard | cytosol | 14.42 | 12.77 |
| Bra009216.1-P | Field mustard | cytosol | 14.6 | 12.29 |
| Bra007026.1-P | Field mustard | golgi, nucleus, plasma membrane | 16.82 | 9.1 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.2 | EnsemblPlantsGene:Bra013980 | EnsemblPlants:Bra013980.1 | EnsemblPlants:Bra013980.1-P | InterPro:GCP |
| GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 | UniProt:M4DBX0 |
| PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF13 | UniParc:UPI0002546EC4 | SEG:seg | : |
Description
AT5G17410 (E=1e-074) | tubulin family protein
Coordinates
chrA08:+:4876985..4880813
Molecular Weight (calculated)
60434.5 Da
IEP (calculated)
7.636
GRAVY (calculated)
-0.122
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPMTPISCP TTPRWKEPRQ AVPHWPLPPG APSLDFWFKI LKFRHLLLGS FRKNKKWLVF ETMGLSSQET RASSRFADSK RFPSDSSSNC GVDQAIGCYD
101: TPVQELIVID VLLSALVGIE GRYISIKRFH GKEDSIAFQV DPSNGFGITG NSQFKKGLVN HAFAAALRAL LLVCYIAHDG IHARAKHFVG SGVLNLLQSQ
201: AKAMAGDNSV RSLLEKMTEC ASNAYLSILE RWVYEGIIDD PYGEFFIAEN RSLKKESLSQ DSTAKYWSQR YSLKETIPGF LANIAATILT TGKYLNAMRE
301: CGHNVQVCLW ITADLSLRTT AAAADPRHED LTCCVDRTSL LKTLGMQKDT DSNSIEDPVS ITGLETFSLS YKGIRSMNSN GTAICRSSLL CRSMLKFISS
401: LLHYLTFEVL EPNWHVMQDR LQSTRSIYEV IQHHDFFLDK CLRGCFLLLP DVLKVSVPFN VIVSQDKCTG ATQWLISSSV DINSQSQKTM IRDTTVTESI
501: FNFEREFNSE LQSLGPVLSK GSQAEPYLTH LSQCILGVSK D
101: TPVQELIVID VLLSALVGIE GRYISIKRFH GKEDSIAFQV DPSNGFGITG NSQFKKGLVN HAFAAALRAL LLVCYIAHDG IHARAKHFVG SGVLNLLQSQ
201: AKAMAGDNSV RSLLEKMTEC ASNAYLSILE RWVYEGIIDD PYGEFFIAEN RSLKKESLSQ DSTAKYWSQR YSLKETIPGF LANIAATILT TGKYLNAMRE
301: CGHNVQVCLW ITADLSLRTT AAAADPRHED LTCCVDRTSL LKTLGMQKDT DSNSIEDPVS ITGLETFSLS YKGIRSMNSN GTAICRSSLL CRSMLKFISS
401: LLHYLTFEVL EPNWHVMQDR LQSTRSIYEV IQHHDFFLDK CLRGCFLLLP DVLKVSVPFN VIVSQDKCTG ATQWLISSSV DINSQSQKTM IRDTTVTESI
501: FNFEREFNSE LQSLGPVLSK GSQAEPYLTH LSQCILGVSK D
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
Arabidopsis Description
Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.