Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0501700-01 | Rice | nucleus | 75.28 | 74.96 |
| TraesCS2D01G355300.1 | Wheat | cytosol | 74.29 | 74.19 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 74.29 | 74.19 |
| OQU81893 | Sorghum | cytosol | 74.29 | 74.19 |
| TraesCS2A01G356400.1 | Wheat | cytosol | 74.15 | 74.05 |
| VIT_14s0066g01030.t01 | Wine grape | cytosol | 73.16 | 73.79 |
| Zm00001d025793_P001 | Maize | cytosol | 74.01 | 73.29 |
| CDX82078 | Canola | mitochondrion | 11.86 | 70.59 |
| KRG89853 | Soybean | cytosol, extracellular, nucleus | 16.95 | 70.59 |
| HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 74.15 | 70.38 |
| AT5G17410.2 | Thale cress | nucleus, plastid | 66.81 | 69.66 |
| KRG89851 | Soybean | cytosol | 44.92 | 68.83 |
| KRH07351 | Soybean | cytosol | 64.41 | 68.67 |
| Bra006406.1-P | Field mustard | nucleus | 58.76 | 68.65 |
| CDX70761 | Canola | nucleus | 65.25 | 68.14 |
| CDX78748 | Canola | nucleus | 66.67 | 68.11 |
| KRH66204 | Soybean | cytosol, nucleus, peroxisome | 63.84 | 68.07 |
| PGSC0003DMT400050760 | Potato | cytosol | 66.38 | 66.48 |
| Solyc02g081460.2.1 | Tomato | cytosol | 66.38 | 66.48 |
| CDY16926 | Canola | cytosol | 49.01 | 66.48 |
| CDY38427 | Canola | cytosol | 50.0 | 61.67 |
| Bra013980.1-P | Field mustard | cytosol | 40.25 | 52.68 |
| GSMUA_Achr10P... | Banana | cytosol | 17.51 | 19.62 |
| GSMUA_Achr9P31020_001 | Banana | extracellular, vacuole | 20.06 | 18.83 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 16.24 | 18.28 |
Protein Annotations
| MapMan:20.1.2.1.2 | ncoils:Coil | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005815 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0043015 | EnsemblPlantsGene:GSMUA_Achr5G24280_001 | EnsemblPlants:GSMUA_Achr5P24280_001 | EnsemblPlants:GSMUA_Achr5T24280_001 | UniProt:M0T1A3 |
| PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF13 | UniParc:UPI000294EB65 | SEG:seg | : |
Description
Putative Gamma-tubulin complex component 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G24280_001]
Coordinates
chr5:+:25716812..25725069
Molecular Weight (calculated)
80124.2 Da
IEP (calculated)
7.425
GRAVY (calculated)
-0.050
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTPGTPRW NLDRPFLTGR FHQEIKAPAQ AAGSRLFSME SFSRGSDNVI GSYPVSVQEL LVIDDLLSAL VGIEGRYISI KRVRGKAGHV IFHIDPSMDL
101: ALQELTERIF PLCQNYVLIN HFVESKSHFK SGLVNHAFAA ALRALLLDYQ AMVAQLEHQF LLGRLSVQGL WFFCQPMMGS LHALSIVVEK ASSNNFSGAT
201: TLNLLQSQAK AMAGDNAVRS LLEKMTQRAS SAYLAILERW VYEGVIDDPY GEFFIAENKS LQKESLTQDY DTKYWVQRYS LKDGIPSFLV SVAGIILTTG
301: KYLNVMRECG HNVQVPLSEN SKLTSIESNH HYLECIKSAY DFASGELLNL IKHKYDLIGK LRSMKRYFLL DQGDYLVHFM DISRDELAKR PEEISVEKLQ
401: SLLDLALRST AAASDPCHEE LTCCVERVSL LKRLSTLKDL DSTEPSEGNI LPDSDPQSEL FSITGLETFC LSYKVQWPLS LIIPRKALTK YQLIFRLLFH
501: CKHVNRQLCM AWQVHQGFRA INILGTAILR SSILCRSMIK FINSLLHYLT FEVLEPNWHL MHDRLQTVKS VDEVIQFHDF FLQKCLKECL LLLPQVFKKI
601: EKLKSVCLQY AASIQLLVPS MYVPEVASTN DGTGSFGLGR SKPWRSKNKN RQLKLAAENT IICDSIMKFE KEFNDELQSL VPILSSSSQA EPYLTHLAQC
701: ILGLGSEQ
101: ALQELTERIF PLCQNYVLIN HFVESKSHFK SGLVNHAFAA ALRALLLDYQ AMVAQLEHQF LLGRLSVQGL WFFCQPMMGS LHALSIVVEK ASSNNFSGAT
201: TLNLLQSQAK AMAGDNAVRS LLEKMTQRAS SAYLAILERW VYEGVIDDPY GEFFIAENKS LQKESLTQDY DTKYWVQRYS LKDGIPSFLV SVAGIILTTG
301: KYLNVMRECG HNVQVPLSEN SKLTSIESNH HYLECIKSAY DFASGELLNL IKHKYDLIGK LRSMKRYFLL DQGDYLVHFM DISRDELAKR PEEISVEKLQ
401: SLLDLALRST AAASDPCHEE LTCCVERVSL LKRLSTLKDL DSTEPSEGNI LPDSDPQSEL FSITGLETFC LSYKVQWPLS LIIPRKALTK YQLIFRLLFH
501: CKHVNRQLCM AWQVHQGFRA INILGTAILR SSILCRSMIK FINSLLHYLT FEVLEPNWHL MHDRLQTVKS VDEVIQFHDF FLQKCLKECL LLLPQVFKKI
601: EKLKSVCLQY AASIQLLVPS MYVPEVASTN DGTGSFGLGR SKPWRSKNKN RQLKLAAENT IICDSIMKFE KEFNDELQSL VPILSSSSQA EPYLTHLAQC
701: ILGLGSEQ
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSG VEQAIGCYDT PVQELIVIDD LLSALVGIEG RYISIKRFHG KEDSIAFQVD
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE
Arabidopsis Description
Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.