Factsheet for Os04t0501700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G356400.1	Wheat	cytosol	90.44	90.69
TraesCS2D01G355300.1	Wheat	cytosol	90.3	90.55
OQU81893	Sorghum	cytosol	90.3	90.55
TraesCS2B01G375700.1	Wheat	nucleus	89.87	90.13
Zm00001d025793_P001	Maize	cytosol	90.44	89.93
HORVU2Hr1G086820.13	Barley	cytosol, plastid	89.87	85.66
GSMUA_Achr5P24280_001	Banana	cytosol	74.96	75.28
CDX82078	Canola	mitochondrion	12.24	73.11
VIT_14s0066g01030.t01	Wine grape	cytosol	69.48	70.37
AT5G17410.2	Thale cress	nucleus, plastid	66.24	69.37
KRG89853	Soybean	cytosol, extracellular, nucleus	16.46	68.82
CDY16926	Canola	cytosol	49.65	67.62
CDX70761	Canola	nucleus	64.42	67.55
CDX78748	Canola	nucleus	65.82	67.53
Bra006406.1-P	Field mustard	nucleus	57.52	67.49
KRH07351	Soybean	cytosol	62.87	67.32
KRG89851	Soybean	cytosol	43.6	67.1
PGSC0003DMT400050760	Potato	cytosol	66.53	66.9
KRH66204	Soybean	cytosol, nucleus, peroxisome	62.45	66.87
Solyc02g081460.2.1	Tomato	cytosol	66.24	66.62
CDY38427	Canola	cytosol	50.63	62.72
Bra013980.1-P	Field mustard	cytosol	40.23	52.87
Os09t0446200-01	Rice	cytosol, nucleus	20.96	17.72
Os05t0154500-01	Rice	extracellular, vacuole	18.57	17.51

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.2	EntrezGene:4336312	EMBL:AK103837	ProteinID:BAF15145.1	ProteinID:BAS89940.1
ProteinID:EEE61276.1	InterPro:GCP	GO:GO:0000003	GO:GO:0000226	GO:GO:0000922	GO:GO:0000923
GO:GO:0003674	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856	GO:GO:0005874
GO:GO:0007020	GO:GO:0007049	GO:GO:0008150	GO:GO:0008275	GO:GO:0009987	GO:GO:0016043
GO:GO:0031122	GO:GO:0043015	GO:GO:0051011	GO:GO:0051321	GO:GO:0051415	GO:GO:0090307
EnsemblPlantsGene:Os04g0501700	EnsemblPlants:Os04t0501700-01	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF13	UniProt:Q0JBZ2
UniParc:UPI000021C670	RefSeq:XP_015636746.1	SEG:seg	:	:	:

Description

Spc97/Spc98 family protein. (Os04t0501700-01)

Coordinates

chr4:+:25048428..25054437

Molecular Weight (calculated)

79884.0 Da

IEP (calculated)

7.632

GRAVY (calculated)

-0.043

Length

711 amino acids

Sequence
(BLAST)

001: MDPAPATPRW NLERPYLTGR FHQEAKVAAA AQGAGSKPYS LDSFSRGGGG GGGAESVIGS YAVSVQELLV IDDLLSALVG IEGRYISIKR VRGKEGYVVF
101: QIDSSMDLAL QELTRRIFPL CEDFVLVYHF VESRSHFKSG LVNHALAAAL RAFLLDYQAM VAQLEHQFRL GRLSVQGLWF FCQRMMSSLN ALAVLVEKAI
201: SNNTSGSATL NLLQSQAKAM AGDSAVRSLL EKMTECASAA YLRMLERWVY EGVIDDPYGE FFIAENKSLQ KESLTQDYDA KYWQQRYSLK DGIPSFLTNV
301: AATILTTGKY LNVMRECEYT VQVPLSESSK LMGFGSNHQY LECIKSAYDF ASGELLTLMK DKYDLIGKLR SLKRYLLLDQ GDFLVHFMDI AREELTKKPE
401: EISVEKLQSL VDIALRSTAA ASDPSHEDLT CCVERSSLLK KLSTLKDLDC AYPSDKLVAA DVDHPMPLSV TGLETFCLSY KVQWPLSLVI SRKSLTKYQL
501: IFRLLFHCKH VSRQLCTAWQ IQQGFRSVKI LGTPVLRSSI LCRSMLKFVN SLLHYLTFEV LEPNWHLMHD RLQTARSIDE VIQIHDFFLQ KCLKECLLLL
601: PELLVKIEKL KALCLQYATS IQLLIPSIDV AKPENTSKSR MPRSKIKETK NRGQQLKLAS ENVVMSESIL KFEAEFNSEL QSLIPTLSNS SQAEPYLTHL
701: GQCILGVGVD Q

Best Arabidopsis Sequence Match ( AT5G17410.2 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.