CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82078	Canola	mitochondrion	25.88	36.97
KRH66204	Soybean	cytosol, nucleus, peroxisome	94.12	24.1
KRH07351	Soybean	cytosol	91.18	23.34
Bra006406.1-P	Field mustard	nucleus	76.47	21.45
VIT_14s0066g01030.t01	Wine grape	cytosol	78.24	18.95
AT5G17410.2	Thale cress	nucleus, plastid	75.29	18.85
CDX78748	Canola	nucleus	76.47	18.76
CDX70761	Canola	nucleus	70.59	17.7
PGSC0003DMT400050760	Potato	cytosol	72.35	17.4
Solyc02g081460.2.1	Tomato	cytosol	72.35	17.4
GSMUA_Achr5P24280_001	Banana	cytosol	70.59	16.95
Os04t0501700-01	Rice	nucleus	68.82	16.46
TraesCS2A01G356400.1	Wheat	cytosol	67.65	16.22
TraesCS2B01G375700.1	Wheat	nucleus	67.65	16.22
TraesCS2D01G355300.1	Wheat	cytosol	67.65	16.22
OQU81893	Sorghum	cytosol	67.65	16.22
Zm00001d025793_P001	Maize	cytosol	66.47	15.8
HORVU2Hr1G086820.13	Barley	cytosol, plastid	66.47	15.15
Bra013980.1-P	Field mustard	cytosol	46.47	14.6
CDY16926	Canola	cytosol	29.41	9.58
CDY38427	Canola	cytosol	20.59	6.1
KRG95411	Soybean	cytosol	21.18	4.28
KRH67085	Soybean	cytosol	20.0	4.03
KRH69283	Soybean	plasma membrane	15.88	3.68
KRH31863	Soybean	endoplasmic reticulum	15.29	3.55
KRH16759	Soybean	mitochondrion, nucleus	0.0	0.0
KRG89851	Soybean	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A0R0E735	EMBL:ACUP02012296	InterPro:GCP	EnsemblPlantsGene:GLYMA_20G0512001	GO:GO:0000226
GO:GO:0000922	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	EnsemblPlants:KRG89853	ProteinID:KRG89853
ProteinID:KRG89853.1	PFAM:PF04130	UniParc:UPI0006EDCE64	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:11367915..11377785

Molecular Weight (calculated)

18957.2 Da

IEP (calculated)

5.188

GRAVY (calculated)

0.295

Length

170 amino acids

Sequence
(BLAST)

001: MNQTAIANFE KAIGCYSPSV QELIVIDDVL SAMVGIEGRY ILIKTICGKS DDITFLVDPS MDLALQELAK RIFPLCKSFL LINQFVESRS EFQSGLVNHA
101: FSAALRALLL DYQALVAQLE HQFRLGRLSL QGLWFYCQSQ AKAMAGDNAV RMMLEKMTQC ASSAYMSILE

Best Arabidopsis Sequence Match ( AT5G17410.1 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSG VEQAIGCYDT PVQELIVIDD LLSALVGIEG RYISIKRFHG KEDSIAFQVD
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.