Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16926 | Canola | cytosol | 69.51 | 90.42 |
| CDY38427 | Canola | cytosol | 72.16 | 85.37 |
| KRG89853 | Soybean | cytosol, extracellular, nucleus | 18.85 | 75.29 |
| VIT_14s0066g01030.t01 | Wine grape | cytosol | 75.55 | 73.08 |
| Bra013980.1-P | Field mustard | cytosol | 58.17 | 73.01 |
| KRH07351 | Soybean | cytosol | 70.4 | 71.99 |
| KRH66204 | Soybean | cytosol, nucleus, peroxisome | 69.81 | 71.39 |
| KRG89851 | Soybean | cytosol | 46.98 | 69.05 |
| PGSC0003DMT400050760 | Potato | cytosol | 69.96 | 67.19 |
| Solyc02g081460.2.1 | Tomato | cytosol | 69.81 | 67.04 |
| GSMUA_Achr5P24280_001 | Banana | cytosol | 69.66 | 66.81 |
| Os04t0501700-01 | Rice | nucleus | 69.37 | 66.24 |
| TraesCS2D01G355300.1 | Wheat | cytosol | 68.78 | 65.87 |
| TraesCS2A01G356400.1 | Wheat | cytosol | 68.78 | 65.87 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 68.78 | 65.87 |
| OQU81893 | Sorghum | cytosol | 68.34 | 65.44 |
| Zm00001d025793_P001 | Maize | cytosol | 68.48 | 65.03 |
| HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 68.48 | 62.33 |
| AT3G53760.1 | Thale cress | vacuole | 19.29 | 17.58 |
| AT5G06680.1 | Thale cress | cytosol | 21.5 | 17.42 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.2 | EntrezGene:831607 | ProteinID:AED92422.1 | ArrayExpress:AT5G17410 | EnsemblPlantsGene:AT5G17410 |
| RefSeq:AT5G17410 | TAIR:AT5G17410 | RefSeq:AT5G17410-TAIR-G | EnsemblPlants:AT5G17410.2 | TAIR:AT5G17410.2 | Unigene:At.71017 |
| ncoils:Coil | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0043015 | RefSeq:NP_850838.1 | PFAM:PF04130 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020094 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR19302 |
| PANTHER:PTHR19302:SF13 | UniParc:UPI0000196D9B | SEG:seg | : | : | : |
Description
Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
Coordinates
chr5:+:5730610..5736695
Molecular Weight (calculated)
77036.9 Da
IEP (calculated)
7.209
GRAVY (calculated)
-0.120
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.