Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
OQU81893 | Sorghum | cytosol | 95.66 | 96.47 |
Os04t0501700-01 | Rice | nucleus | 89.93 | 90.44 |
TraesCS2A01G356400.1 | Wheat | cytosol | 89.09 | 89.84 |
TraesCS2D01G355300.1 | Wheat | cytosol | 88.81 | 89.56 |
TraesCS2B01G375700.1 | Wheat | nucleus | 88.39 | 89.14 |
HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 88.53 | 84.85 |
GSMUA_Achr5P24280_001 | Banana | cytosol | 73.29 | 74.01 |
CDX82078 | Canola | mitochondrion | 12.17 | 73.11 |
VIT_14s0066g01030.t01 | Wine grape | cytosol | 68.53 | 69.8 |
AT5G17410.2 | Thale cress | nucleus, plastid | 65.03 | 68.48 |
CDX70761 | Canola | nucleus | 63.5 | 66.96 |
CDX78748 | Canola | nucleus | 64.76 | 66.81 |
KRH07351 | Soybean | cytosol | 61.96 | 66.72 |
CDY16926 | Canola | cytosol | 48.67 | 66.67 |
Bra006406.1-P | Field mustard | nucleus | 56.36 | 66.5 |
KRG89853 | Soybean | cytosol, extracellular, nucleus | 15.8 | 66.47 |
KRG89851 | Soybean | cytosol | 42.94 | 66.45 |
KRH66204 | Soybean | cytosol, nucleus, peroxisome | 61.54 | 66.27 |
PGSC0003DMT400050760 | Potato | cytosol | 65.45 | 66.2 |
Solyc02g081460.2.1 | Tomato | cytosol | 65.17 | 65.91 |
CDY38427 | Canola | cytosol | 49.51 | 61.67 |
Bra013980.1-P | Field mustard | cytosol | 39.44 | 52.13 |
Zm00001d020664_P016 | Maize | cytosol | 20.28 | 17.04 |
Zm00001d037593_P004 | Maize | plasma membrane | 17.2 | 14.7 |
Protein Annotations
Gene3D:1.20.120.1900 | EntrezGene:100274060 | MapMan:20.1.2.1.2 | UniProt:A0A1D6J9L1 | ProteinID:AQK44603.1 | InterPro:GCP |
GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005856 | GO:GO:0005874 |
GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 | PFAM:PF04130 |
PANTHER:PTHR19302 | PANTHER:PTHR19302:SF13 | UniParc:UPI000844E524 | EnsemblPlantsGene:Zm00001d025793 | EnsemblPlants:Zm00001d025793_P001 | EnsemblPlants:Zm00001d025793_T001 |
SEG:seg | : | : | : | : | : |
Description
Gamma-tubulin complex component 2
Coordinates
chr10:+:129804930..129812444
Molecular Weight (calculated)
80272.3 Da
IEP (calculated)
8.082
GRAVY (calculated)
-0.041
Length
715 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPAPATPRW NLERPYLTGR FHQEAKAAAA AQGLGSKPFS LDSFSRGAGA GSVIGSYAVS VQELLVIDDL LSALVGIEGR YVSIKRVRGK EGYVVFQIDS
101: SMDLALQELT RRIFPLCEDY VLVSQFVESR SHFKNGLVNH ALAAALRAFL LDYQAMVAQL EHQFRLGRLS VQGLWFFCQR MMSSLNALAV LVEKATSNNT
201: NGSATLNLLQ SQAKAMGGDS AVRSLLEKMT EYASAAYLRM LERWVYEGVI DDPYGEFFIA ENKSLQKESL TQDYDAKYWQ QRYSLKEGIP SFLTNVAATI
301: LTTGKYLNVM RECGHNVQVS LSDNSKLMSF GSNHQYLECI KSAYDFASGE LLTLMKDKYD LIGKLRSLKR YLLLDQLLIL SVLSSLQGDF LVHFMDIARE
401: ELTKKPEEIS AEKLQSLLDI ALRSTAAASD PSHEELICCV ERSSLLKKLA TLKDLDPADK LAAADVDRSM QLSITGLETF CLSNKVQWPL SLVISRKALT
501: KYQLIFRLLF HCKHVSRQLC AAWQIQQAFR SVKILGTPIL RSSILCRSML KFVNSLLHYL TFEVLEPNWH LMHDRLQTAR SIDEVIQIHD FFLQKCLKEC
601: LLLSPELLVK VEKLKGLCLQ YATSIQILMP SIDVANSENT SKSRKSRSRI DKSQDRDQQL KLASENVVMS ESILKFEAAF NSELQSLAPT LSNSSQAEPY
701: VTHLAQCILG VRIGQ
101: SMDLALQELT RRIFPLCEDY VLVSQFVESR SHFKNGLVNH ALAAALRAFL LDYQAMVAQL EHQFRLGRLS VQGLWFFCQR MMSSLNALAV LVEKATSNNT
201: NGSATLNLLQ SQAKAMGGDS AVRSLLEKMT EYASAAYLRM LERWVYEGVI DDPYGEFFIA ENKSLQKESL TQDYDAKYWQ QRYSLKEGIP SFLTNVAATI
301: LTTGKYLNVM RECGHNVQVS LSDNSKLMSF GSNHQYLECI KSAYDFASGE LLTLMKDKYD LIGKLRSLKR YLLLDQLLIL SVLSSLQGDF LVHFMDIARE
401: ELTKKPEEIS AEKLQSLLDI ALRSTAAASD PSHEELICCV ERSSLLKKLA TLKDLDPADK LAAADVDRSM QLSITGLETF CLSNKVQWPL SLVISRKALT
501: KYQLIFRLLF HCKHVSRQLC AAWQIQQAFR SVKILGTPIL RSSILCRSML KFVNSLLHYL TFEVLEPNWH LMHDRLQTAR SIDEVIQIHD FFLQKCLKEC
601: LLLSPELLVK VEKLKGLCLQ YATSIQILMP SIDVANSENT SKSRKSRSRI DKSQDRDQQL KLASENVVMS ESILKFEAAF NSELQSLAPT LSNSSQAEPY
701: VTHLAQCILG VRIGQ
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
Arabidopsis Description
Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.