Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g081460.2.1 | Tomato | cytosol | 98.59 | 98.59 |
| VIT_14s0066g01030.t01 | Wine grape | cytosol | 73.97 | 74.5 |
| KRG89853 | Soybean | cytosol, extracellular, nucleus | 17.4 | 72.35 |
| KRH07351 | Soybean | cytosol | 67.19 | 71.54 |
| CDX82078 | Canola | mitochondrion | 12.02 | 71.43 |
| KRH66204 | Soybean | cytosol, nucleus, peroxisome | 67.04 | 71.39 |
| KRG89851 | Soybean | cytosol | 46.11 | 70.56 |
| AT5G17410.2 | Thale cress | nucleus, plastid | 67.19 | 69.96 |
| CDY16926 | Canola | cytosol | 50.35 | 68.2 |
| Bra006406.1-P | Field mustard | nucleus | 58.42 | 68.15 |
| CDX70761 | Canola | nucleus | 65.35 | 68.14 |
| CDX78748 | Canola | nucleus | 66.62 | 67.97 |
| Os04t0501700-01 | Rice | nucleus | 66.9 | 66.53 |
| GSMUA_Achr5P24280_001 | Banana | cytosol | 66.48 | 66.38 |
| TraesCS2A01G356400.1 | Wheat | cytosol | 66.2 | 66.01 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 66.2 | 66.01 |
| TraesCS2D01G355300.1 | Wheat | cytosol | 66.2 | 66.01 |
| OQU81893 | Sorghum | cytosol | 65.91 | 65.73 |
| Zm00001d025793_P001 | Maize | cytosol | 66.2 | 65.45 |
| CDY38427 | Canola | cytosol | 52.05 | 64.11 |
| HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 65.91 | 62.47 |
| Bra013980.1-P | Field mustard | cytosol | 42.01 | 54.9 |
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 8.49 | 18.69 |
| PGSC0003DMT400007029 | Potato | nucleus | 20.23 | 15.29 |
Protein Annotations
| Gene3D:1.20.120.1900 | EntrezGene:102593245 | MapMan:20.1.2.1.2 | ncoils:Coil | InterPro:GCP | GO:GO:0000226 |
| GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 | UniProt:M1BQT3 | PFAM:PF04130 |
| EnsemblPlantsGene:PGSC0003DMG400019714 | PGSC:PGSC0003DMG400019714 | EnsemblPlants:PGSC0003DMT400050760 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF13 | UniParc:UPI000296F1B8 |
| RefSeq:XP_006348193.1 | SEG:seg | : | : | : | : |
Description
Tubulin gamma complex-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019714]
Coordinates
chr2:-:37047957..37057117
Molecular Weight (calculated)
79815.6 Da
IEP (calculated)
6.782
GRAVY (calculated)
-0.094
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSAAAISLC PSTPAWNLDR PFLTGQFYQE TKITPGTTEY KGVSADSSSG ADKAIGCYHA TIQELIVIDD LLSTLIGIEG RYISIKKVRG KEDDITFQVD
101: ASMDLALQEF AKRLFPLCES YILINQFVET RSQFKTGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGKL SIQGLWFYCQ PMMGSMQALS MVVKKAAANN
201: CVGSAVLNLL QSQAKAMAGD HVVRSLLEKM SQSASTAYLG ILERWVYEGV IDDPYGEFFI AENKSLQKES LTQDYDAKYW QQRYSLKDEI PSFLANAAET
301: ILITGKYLNV MRECGHSIQI PVAEKSKLTS AGSNHHYLEC IKSAYDFASG ELLNLVKNKY DLMGKLQSIK HYLLLDQGDF LVHFMDTARE ELMKKPDEIS
401: VEKLQSLLDL ALRSTAAGAD PCHEDLLCCV ERTTLLKRLS TLKDLEISRS APDSNDLEEP LSITGLETFS LNYKVRWPLS LVISRKALTK YQLIFRFLFH
501: CKHVDRQLSG AWQVHQGLRK LDMQGTTVSV SSLLCRNMLK FINSLLHYLT FEVLEPNWHV MLSRLQTAKS IDEVIQYHDF FLDKCLRECV LLSPALLKKV
601: ERLKLICLQY AAAMQRLITS SLDTNDNDTL SNDSPSIEKY KNLKLRTPYQ MLRLAPENVT VLESVLKFEK EFSFELHSLG PILSSGSRAE PYLTHLAQWI
701: LGVGKDQ
101: ASMDLALQEF AKRLFPLCES YILINQFVET RSQFKTGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGKL SIQGLWFYCQ PMMGSMQALS MVVKKAAANN
201: CVGSAVLNLL QSQAKAMAGD HVVRSLLEKM SQSASTAYLG ILERWVYEGV IDDPYGEFFI AENKSLQKES LTQDYDAKYW QQRYSLKDEI PSFLANAAET
301: ILITGKYLNV MRECGHSIQI PVAEKSKLTS AGSNHHYLEC IKSAYDFASG ELLNLVKNKY DLMGKLQSIK HYLLLDQGDF LVHFMDTARE ELMKKPDEIS
401: VEKLQSLLDL ALRSTAAGAD PCHEDLLCCV ERTTLLKRLS TLKDLEISRS APDSNDLEEP LSITGLETFS LNYKVRWPLS LVISRKALTK YQLIFRFLFH
501: CKHVDRQLSG AWQVHQGLRK LDMQGTTVSV SSLLCRNMLK FINSLLHYLT FEVLEPNWHV MLSRLQTAKS IDEVIQYHDF FLDKCLRECV LLSPALLKKV
601: ERLKLICLQY AAAMQRLITS SLDTNDNDTL SNDSPSIEKY KNLKLRTPYQ MLRLAPENVT VLESVLKFEK EFSFELHSLG PILSSGSRAE PYLTHLAQWI
701: LGVGKDQ
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSG VEQAIGCYDT PVQELIVIDD LLSALVGIEG RYISIKRFHG KEDSIAFQVD
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE
Arabidopsis Description
Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.