Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G355300.1 | Wheat | cytosol | 93.97 | 98.87 |
| TraesCS2A01G356400.1 | Wheat | cytosol | 93.97 | 98.87 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 93.7 | 98.59 |
| Os04t0501700-01 | Rice | nucleus | 85.66 | 89.87 |
| OQU81893 | Sorghum | cytosol | 84.99 | 89.42 |
| Zm00001d025793_P001 | Maize | cytosol | 84.85 | 88.53 |
| GSMUA_Achr5P24280_001 | Banana | cytosol | 70.38 | 74.15 |
| CDX82078 | Canola | mitochondrion | 11.39 | 71.43 |
| VIT_14s0066g01030.t01 | Wine grape | cytosol | 66.49 | 70.66 |
| AT5G17410.2 | Thale cress | nucleus, plastid | 62.33 | 68.48 |
| CDX70761 | Canola | nucleus | 61.26 | 67.4 |
| KRH07351 | Soybean | cytosol | 59.79 | 67.17 |
| CDX78748 | Canola | nucleus | 62.33 | 67.1 |
| Bra006406.1-P | Field mustard | nucleus | 54.42 | 67.0 |
| KRG89851 | Soybean | cytosol | 41.42 | 66.88 |
| KRH66204 | Soybean | cytosol, nucleus, peroxisome | 59.38 | 66.72 |
| CDY16926 | Canola | cytosol | 46.65 | 66.67 |
| KRG89853 | Soybean | cytosol, extracellular, nucleus | 15.15 | 66.47 |
| PGSC0003DMT400050760 | Potato | cytosol | 62.47 | 65.91 |
| Solyc02g081460.2.1 | Tomato | cytosol | 62.33 | 65.77 |
| CDY38427 | Canola | cytosol | 47.72 | 62.02 |
| Bra013980.1-P | Field mustard | cytosol | 37.8 | 52.13 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 18.77 | 19.75 |
| HORVU1Hr1G022100.2 | Barley | extracellular, vacuole | 17.96 | 17.91 |
| HORVU6Hr1G020090.2 | Barley | plastid | 19.57 | 16.28 |
Protein Annotations
| MapMan:20.1.2.1.2 | UniProt:A0A287ISL8 | ncoils:Coil | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 | EnsemblPlantsGene:HORVU2Hr1G086820 | EnsemblPlants:HORVU2Hr1G086820.13 | PFAM:PF04130 |
| PANTHER:PTHR19302 | PANTHER:PTHR19302:SF13 | UniParc:UPI000B46CE93 | SEG:seg | : | : |
Description
Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:A0A287ISL8]
Coordinates
chrchr2H:-:624655852..624662418
Molecular Weight (calculated)
83207.6 Da
IEP (calculated)
7.869
GRAVY (calculated)
-0.065
Length
746 amino acids
Sequence
(BLAST)
(BLAST)
001: ACTVDFKQTA GICPSSTHLP RLSPSPVATA PLPAHPEMDP APATPRWNLE RPYLTGRFHQ EAKVSAASQA PGSKPFSIDS FSRGAGGGAG SVLGSYAVSV
101: QELLVIDDLL SALVGIEGRY ISIKRVRGKE GYVVFQIDSS MDLALQELTR RIFPLCEDFV LASQFVESRS HFKNGLVNHA LAAALRAFLL DYQAMVAQLE
201: HQFRFGRLSV QGLWFFCQRM MSSLNALAVL IEKAMSNNTS GSATLNLLHS QAKAMSGDSA VRSLLEKMTD CASAAYLRML ERWVYEGVID DPYGEFFIAE
301: NKSLQKESLT QDYDAKYWQQ RYSLKDGIPS FLNNVAATIL TTGKYLNVMR ECGHNVQVSL SENSKLTSFG SNHQYLECIK SAYDFASGEL LTLMKDKYDL
401: IGKLRSLKRY LLLDQGDFLV HFMDIAREEL TKKPEDISVE KLQSLVDIAL RSTAAASDPS HEDLTCCVER SSLLKKLTTL KDLDCAYSSD KLAAADVDQP
501: VTLNITGLET FCLGYKIPWP LSLVISRKAL TKYQLIFRLL FHCKHVSRQL CQAWQIQQGF RSVKILGTPI LRSSILCRSM LKFVNSLLHY LTFEVLEPNW
601: HSMHGRLQTA RSIDEVIQIH DFFLQKCLKE CLLLLPELLM KVEKLKALCL QYATSIQLLI PSIEVAAPES KSKSGSSRAR AKRSQDRDEQ LKLASENAVM
701: SQSILKFESE FNAELQSLVP TLSKSSQAEP YLTHLAQCIL GVGIDQ
101: QELLVIDDLL SALVGIEGRY ISIKRVRGKE GYVVFQIDSS MDLALQELTR RIFPLCEDFV LASQFVESRS HFKNGLVNHA LAAALRAFLL DYQAMVAQLE
201: HQFRFGRLSV QGLWFFCQRM MSSLNALAVL IEKAMSNNTS GSATLNLLHS QAKAMSGDSA VRSLLEKMTD CASAAYLRML ERWVYEGVID DPYGEFFIAE
301: NKSLQKESLT QDYDAKYWQQ RYSLKDGIPS FLNNVAATIL TTGKYLNVMR ECGHNVQVSL SENSKLTSFG SNHQYLECIK SAYDFASGEL LTLMKDKYDL
401: IGKLRSLKRY LLLDQGDFLV HFMDIAREEL TKKPEDISVE KLQSLVDIAL RSTAAASDPS HEDLTCCVER SSLLKKLTTL KDLDCAYSSD KLAAADVDQP
501: VTLNITGLET FCLGYKIPWP LSLVISRKAL TKYQLIFRLL FHCKHVSRQL CQAWQIQQGF RSVKILGTPI LRSSILCRSM LKFVNSLLHY LTFEVLEPNW
601: HSMHGRLQTA RSIDEVIQIH DFFLQKCLKE CLLLLPELLM KVEKLKALCL QYATSIQLLI PSIEVAAPES KSKSGSSRAR AKRSQDRDEQ LKLASENAVM
701: SQSILKFESE FNAELQSLVP TLSKSSQAEP YLTHLAQCIL GVGIDQ
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
Arabidopsis Description
Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.