Factsheet for VIT_14s0066g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89853	Soybean	cytosol, extracellular, nucleus	18.95	78.24
KRG89851	Soybean	cytosol	51.0	77.49
CDX82078	Canola	mitochondrion	12.96	76.47
KRH07351	Soybean	cytosol	72.22	76.36
KRH66204	Soybean	cytosol, nucleus, peroxisome	71.79	75.9
AT5G17410.2	Thale cress	nucleus, plastid	73.08	75.55
CDX70761	Canola	nucleus	72.36	74.93
Bra006406.1-P	Field mustard	nucleus	64.39	74.59
CDX78748	Canola	nucleus	73.22	74.17
Solyc02g081460.2.1	Tomato	cytosol	74.64	74.12
PGSC0003DMT400050760	Potato	cytosol	74.5	73.97
GSMUA_Achr5P24280_001	Banana	cytosol	73.79	73.16
CDY16926	Canola	cytosol	54.27	72.99
TraesCS2D01G355300.1	Wheat	cytosol	70.94	70.24
TraesCS2A01G356400.1	Wheat	cytosol	70.8	70.1
TraesCS2B01G375700.1	Wheat	nucleus	70.8	70.1
Os04t0501700-01	Rice	nucleus	70.37	69.48
OQU81893	Sorghum	cytosol	69.37	68.69
Zm00001d025793_P001	Maize	cytosol	69.8	68.53
CDY38427	Canola	cytosol	55.41	67.77
HORVU2Hr1G086820.13	Barley	cytosol, plastid	70.66	66.49
Bra013980.1-P	Field mustard	cytosol	45.01	58.41
VIT_08s0007g06730.t01	Wine grape	cytosol	22.51	18.5
VIT_07s0005g00610.t01	Wine grape	vacuole	17.81	16.82

Protein Annotations

Gene3D:1.20.120.1900	EntrezGene:100259303	wikigene:100259303	MapMan:20.1.2.1.2	ProteinID:CBI34898	ProteinID:CBI34898.3
UniProt:D7TWM3	EMBL:FN596252	InterPro:GCP	GO:GO:0000003	GO:GO:0000226	GO:GO:0000922
GO:GO:0000923	GO:GO:0003674	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856
GO:GO:0005874	GO:GO:0007020	GO:GO:0007049	GO:GO:0008150	GO:GO:0008275	GO:GO:0009987
GO:GO:0016043	GO:GO:0031122	GO:GO:0043015	GO:GO:0051011	GO:GO:0051321	GO:GO:0051415
GO:GO:0090307	EntrezGene:LOC100259303	wikigene:LOC100259303	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF13
UniParc:UPI0001BE4560	ArrayExpress:VIT_14s0066g01030	EnsemblPlantsGene:VIT_14s0066g01030	EnsemblPlants:VIT_14s0066g01030.t01	unigene:Vvi.16112	RefSeq:XP_002273947
RefSeq:XP_002273947.2	RefSeq:XP_019080597.1	SEG:seg	:	:	:

Description

Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:D7TWM3]

Coordinates

chr14:+:27461935..27477999

Molecular Weight (calculated)

79188.9 Da

IEP (calculated)

8.147

GRAVY (calculated)

-0.078

Length

702 amino acids

Sequence
(BLAST)

001: MDATSSCPST PRWNVERPFL TGRFHQETKS RHSEAKGFSM DSLNTGLEKA IACYHASVQE LIVIDDLLSA LVGIEGRYIS IKRFRGKEFD VTFQIDASMD
101: LALQELAKRI FPLCESFLLI NQFVESRSQF KTGLVNHAFA AALRAFLLDY QAMVAQLEHQ FRLGRLSIQG LWFYCQPMMG SMLALSTVIH KASANNFMGS
201: AVLNLLQSQA KAMAGDNAVR SLLEKMTQCA SSAYLGILER WVYEGVIDDP YGEFFIAENK SLQKESLTQD YDAKYWGQRY SLKDGIPSFL ANAAGTILTT
301: GKYLNVMREC GHNVQVPASE DSKFISFGSN HHYLECIKAA YEFSSTELLN LIKEKYDLLG KLRSIKHYLL LDQGDFLVHF MDIARDELAK RLDDISVEKL
401: QSLLDLALRT TAAAADPCHE DLTCCVERSS LLKRLGTLKA LEIRSLADSN DLKEPVSISG LETFSLSYKV QWPLSIVISR KALTKYQLIF RFLFHCKHVN
501: RQLCGAWQLH QGVRAINMRG TAIPRSSLLC RSMLKFINSL LHYLTFEVLE PNWHVMHNRL QTAKSIDEVI QFHDFFLDKC LRECLLLLPE LLKKVERLKS
601: LCLQYASATQ RLISSSVDIP KSEVPSKGSL GLEKSKQGKS RIPSRVLKLA ITNSTVTDSI LKFEKEFNAE LHSLGPILSN SAQAEPHLTH LAQWILGVGN
701: EQ

Best Arabidopsis Sequence Match ( AT5G17410.1 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSG VEQAIGCYDT PVQELIVIDD LLSALVGIEG RYISIKRFHG KEDSIAFQVD
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.