CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82078	Canola	mitochondrion	19.92	87.39
CDY38427	Canola	cytosol	85.25	77.53
CDX70761	Canola	nucleus	91.19	70.21
AT5G17410.2	Thale cress	nucleus, plastid	90.42	69.51
CDX78748	Canola	nucleus	91.57	68.98
KRG89851	Soybean	cytosol	56.9	64.29
KRH07351	Soybean	cytosol	72.41	56.93
KRH66204	Soybean	cytosol, nucleus, peroxisome	72.22	56.78
VIT_14s0066g01030.t01	Wine grape	cytosol	72.99	54.27
PGSC0003DMT400050760	Potato	cytosol	68.2	50.35
Solyc02g081460.2.1	Tomato	cytosol	68.01	50.21
Os04t0501700-01	Rice	nucleus	67.62	49.65
TraesCS2D01G355300.1	Wheat	cytosol	67.05	49.37
TraesCS2A01G356400.1	Wheat	cytosol	66.86	49.22
TraesCS2B01G375700.1	Wheat	nucleus	66.86	49.22
GSMUA_Achr5P24280_001	Banana	cytosol	66.48	49.01
OQU81893	Sorghum	cytosol	66.48	48.94
Zm00001d025793_P001	Maize	cytosol	66.67	48.67
HORVU2Hr1G086820.13	Barley	cytosol, plastid	66.67	46.65
KRG89853	Soybean	cytosol, extracellular, nucleus	9.58	29.41
CDY14071	Canola	cytosol	21.65	18.46
CDX78203	Canola	extracellular, vacuole	20.5	14.38
CDX73526	Canola	extracellular, vacuole	20.5	14.38
CDY04999	Canola	cytosol	21.46	13.71
CDY14072	Canola	cytosol	4.21	12.09
CDX98945	Canola	cytosol	2.3	11.76
CDX70079	Canola	cytosol	13.03	10.58

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.2	GO:A0A078FVC9	UniProt:A0A078FVC9	EnsemblPlants:CDY16926	ProteinID:CDY16926
ProteinID:CDY16926.1	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815
GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0043015	GO:GO:0090063	EnsemblPlantsGene:GSBRNA2T00094842001	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF13
UniParc:UPI0004EDBB57	SEG:seg	:	:	:	:

Description

BnaC09g40530DGamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:A0A078FVC9]

Coordinates

chrLK032068:-:377810..381503

Molecular Weight (calculated)

59586.4 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.079

Length

522 amino acids

Sequence
(BLAST)

001: MHLQLHSEHS FLVIQPMVAQ LEHQFRLGRL SLQGLWFYCQ PMMGSMRALA AVIQQASSKH FVGSGVLNLL QNQAKAMAGD NSVRSLLEKM TECASNAYLS
101: ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKETI PGFLANIAAT ILTTGKYLNV MRGCGHNVQV PISERSKLTI FGSNHHYLEC
201: IKAAHEFASK ELVSLIMDKY GLIGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRTSLLTTLG
301: MQKDLDSNSI EDPVSITGLE TFSFGYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ LCGAWQIHQG IRSMNSNGTA IRRSSLLCRS MLKFISSLLH
401: YLTFEANFDC LAVLEPNWHV MHDRLQSTRS VEVIQHHDFF LDKCLRGCLL LLPDVLKKME KLKSVCLHYA EWLISSSIHI NSQSQKTMIR DTTVTESIFN
501: FEREFNSELQ SLGPWILGVS KE

Best Arabidopsis Sequence Match ( AT5G17410.2 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.