CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89853	Soybean	cytosol, extracellular, nucleus	36.97	25.88
CDY16926	Canola	cytosol	87.39	19.92
CDX70761	Canola	nucleus	88.24	15.49
CDY38427	Canola	cytosol	73.11	15.16
CDX78748	Canola	nucleus	88.24	15.15
VIT_14s0066g01030.t01	Wine grape	cytosol	76.47	12.96
KRH07351	Soybean	cytosol	72.27	12.95
KRH66204	Soybean	cytosol, nucleus, peroxisome	70.59	12.65
TraesCS2D01G355300.1	Wheat	cytosol	73.11	12.27
TraesCS2B01G375700.1	Wheat	nucleus	73.11	12.27
TraesCS2A01G356400.1	Wheat	cytosol	73.11	12.27
Os04t0501700-01	Rice	nucleus	73.11	12.24
Zm00001d025793_P001	Maize	cytosol	73.11	12.17
OQU81893	Sorghum	cytosol	72.27	12.13
PGSC0003DMT400050760	Potato	cytosol	71.43	12.02
Solyc02g081460.2.1	Tomato	cytosol	71.43	12.02
GSMUA_Achr5P24280_001	Banana	cytosol	70.59	11.86
HORVU2Hr1G086820.13	Barley	cytosol, plastid	71.43	11.39
KRG89851	Soybean	cytosol	26.89	6.93
CDX70079	Canola	cytosol	27.73	5.13
CDY14071	Canola	cytosol	26.05	5.07
CDY04999	Canola	cytosol	25.21	3.67
CDY14072	Canola	cytosol	5.04	3.3
CDX78203	Canola	extracellular, vacuole	19.33	3.09
CDX73526	Canola	extracellular, vacuole	19.33	3.09
CDX98945	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:20.1.2.1.2	GO:A0A078D497	EnsemblPlants:CDX82078	ProteinID:CDX82078	ProteinID:CDX82078.1	InterPro:GCP
GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005815	GO:GO:0005856	GO:GO:0007020	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	GO:GO:0090063	EnsemblPlantsGene:GSBRNA2T00137102001	PFAM:PF04130
PANTHER:PTHR19302	PANTHER:PTHR19302:SF13	UniParc:UPI0004EE6C1C	:	:	:

Description

BnaC02g22120D

Coordinates

chrLK031827:+:475966..477101

Molecular Weight (calculated)

13736.6 Da

IEP (calculated)

9.674

GRAVY (calculated)

-0.320

Length

119 amino acids

Sequence
(BLAST)

001: MVAQLEHQFR LRRLSLQGLW FYCQPMMGSM RALAALIHQA KAMAGDNSVR SLLEKMTECA SNAYLSILER WVYEGIIDDP YGKFFIAENK SPKKGSLSQD
101: STAIYWSQRY SLKETSRKF

Best Arabidopsis Sequence Match ( AT5G17410.1 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSG VEQAIGCYDT PVQELIVIDD LLSALVGIEG RYISIKRFHG KEDSIAFQVD
101: PSMDLALQEL AKRIFPLCEY YLLIDQFVES SSQFKNGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGRL SIQGLWFYCQ PMMGSMRALA AVIQQASTKQ
201: FVGSGVLNLL QSQAKAMAGD NSVRSLLEKM TECASNAYLS ILERWVYEGI IDDPYGEFFI AENRSLKKES LSQDSTAKYW SQRYSLKDTI PGFLANIAAT
301: ILTTGKYLNV MRECGHNVQV PISERSKLTI FGSNHHYLEC IKAAHEFASI ELVNLIKDKY DLVGRLRSIK HYLLLDQGDF LVHFMDIARE ELNKKVHEIS
401: VEKLQSLLDL ALRTTAAAAD PRHEDLTCCV DRASLLTTLG MHKDTDSNSI EDPMSITGLE TFSLSYKVQW PLSIVISKKA LSKYQLIFRF LFHCKHVERQ
501: LCGAWQIHQG IRSMNSKGTA ILRSSLLCRS MLKFISSLLH YLTFEVLEPN WHVMHDRLQS TRSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHPQKTMIRD TTVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.