CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16926	Canola	cytosol	77.53	85.25
CDX82078	Canola	mitochondrion	15.16	73.11
CDX70761	Canola	nucleus	85.54	72.42
AT5G17410.2	Thale cress	nucleus, plastid	85.37	72.16
CDX78748	Canola	nucleus	85.89	71.14
KRG89851	Soybean	cytosol	54.01	67.1
Bra013980.1-P	Field mustard	cytosol	60.1	63.77
KRH07351	Soybean	cytosol	65.16	56.33
KRH66204	Soybean	cytosol, nucleus, peroxisome	64.98	56.17
VIT_14s0066g01030.t01	Wine grape	cytosol	67.77	55.41
Solyc02g081460.2.1	Tomato	cytosol	64.11	52.05
PGSC0003DMT400050760	Potato	cytosol	64.11	52.05
Os04t0501700-01	Rice	nucleus	62.72	50.63
TraesCS2D01G355300.1	Wheat	cytosol	62.37	50.49
TraesCS2A01G356400.1	Wheat	cytosol	62.2	50.35
TraesCS2B01G375700.1	Wheat	nucleus	62.2	50.35
GSMUA_Achr5P24280_001	Banana	cytosol	61.67	50.0
OQU81893	Sorghum	cytosol	61.5	49.79
Zm00001d025793_P001	Maize	cytosol	61.67	49.51
HORVU2Hr1G086820.13	Barley	cytosol, plastid	62.02	47.72
KRG89853	Soybean	cytosol, extracellular, nucleus	6.1	20.59
CDY14071	Canola	cytosol	19.51	18.3
CDY04999	Canola	cytosol	20.03	14.08
CDX78203	Canola	extracellular, vacuole	18.12	13.98
CDX73526	Canola	extracellular, vacuole	18.12	13.98
CDY14072	Canola	cytosol	4.36	13.74
CDX98945	Canola	cytosol	2.26	12.75
CDX70079	Canola	cytosol	12.37	11.04

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.2	GO:A0A078HKM0	UniProt:A0A078HKM0	EnsemblPlants:CDY38427	ProteinID:CDY38427
ProteinID:CDY38427.1	ncoils:Coil	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0043015	GO:GO:0090063	EnsemblPlantsGene:GSBRNA2T00065863001	PFAM:PF04130	PANTHER:PTHR19302
PANTHER:PTHR19302:SF13	UniParc:UPI0004EEB755	SEG:seg	:	:	:

Description

BnaA10g17310DGamma-tubulin complex component 2 [Source:Projected from Arabidopsis thaliana (AT5G17410) UniProtKB/Swiss-Prot;Acc:Q9C5H9]

Coordinates

chrLK032424:+:10107..14111

Molecular Weight (calculated)

64740.0 Da

IEP (calculated)

7.414

GRAVY (calculated)

-0.123

Length

574 amino acids

Sequence
(BLAST)

001: MESMTPRWNQ DRPGRFHKET RTSSKLADSK WFPSNSSSNS GVEQAIGCYD TPVQELIVID DLLSALLLLN TLNLPMMGSM RALAAVIQQA SAKHFVGSGV
101: LNLLHNQAKA MAGDNSVRSL LEKMTECASN AYLSILERWV YEGIIDDPYG EFFIAENRSL KKESLSQDST AKYWSQRYSL KETIPGFLAN IAATILTTGK
201: YLNVMRECGH NVQVPISERS KLTIFGSNHH YLECIKAAHE FASKELVSLI MDKYGLIGRL RSIKHYLLLD QGDFLVHFMD IAREELNKKV NEISVQKLQV
301: SLLPLFNHLA LRTTASAADP RHEDLTCFVD RTSLLTTLGM DKDPDSNSVE DPVSITGLET FSLSYKVQWP LSIVISKKAL SKYQLIFRFL FHCKHVERQL
401: CGAWQIHQGI RSMNSNGTAI CRSSLLCRSM LKFISSLLHY LTFEVLEPNW HVMQDGLQST RSIDEVIQHH DFFLDKCLRG CFLLLPDVLK VSKLKSVCLQ
501: YAAATQWLIS SSVDINSQSQ KTMIRDTTVT ESIFNFEREF NSELQSLGPV LSKGSQAEPY LTHLSQCILG VSKD

Best Arabidopsis Sequence Match ( AT5G17410.2 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.