CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68212
CDX73014
CDY11089
CDY60144

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	CDX68212	AT1G73790.1	22404201
AT5G06680.1	CDX73014	AT1G73790.1	22404201
AT5G06680.1	CDY11089	AT1G73790.1	22404201
AT5G06680.1	CDY60144	AT1G73790.1	22404201
AT5G06680.1	CDX68212	AT1G73790.1	22427335
AT5G06680.1	CDX73014	AT1G73790.1	22427335
AT5G06680.1	CDY11089	AT1G73790.1	22427335
AT5G06680.1	CDY60144	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009216.1-P	Field mustard	cytosol	99.69	99.69
CDX98945	Canola	cytosol	13.69	86.27
AT5G06680.1	Thale cress	cytosol	80.72	61.93
CDY04999	Canola	cytosol	76.98	60.59
CDY14071	Canola	cytosol	57.08	59.97
VIT_08s0007g06730.t01	Wine grape	cytosol	67.34	50.7
KRH67085	Soybean	cytosol	63.76	48.58
GSMUA_Achr10P...	Banana	cytosol	47.59	48.42
KRG95411	Soybean	cytosol	62.36	47.62
TraesCS6A01G111800.1	Wheat	cytosol	57.54	45.57
HORVU5Hr1G066810.2	Barley	cytosol	50.23	45.56
GSMUA_Achr8P22770_001	Banana	cytosol	44.48	45.47
TraesCS6D01G100700.1	Wheat	cytosol	56.92	45.07
TraesCS5B01G230400.1	Wheat	cytosol	57.7	44.97
TraesCS6B01G140000.1	Wheat	cytosol	56.92	44.8
TraesCS5D01G235900.1	Wheat	cytosol	57.08	44.48
KXG35736	Sorghum	cytosol	57.54	44.36
Solyc09g009140.2.1	Tomato	nucleus	64.07	44.06
PGSC0003DMT400007029	Potato	nucleus	63.92	43.96
Os09t0446200-01	Rice	cytosol, nucleus	57.08	43.64
Zm00001d020664_P016	Maize	cytosol	57.23	43.24
TraesCS5A01G232100.1	Wheat	cytosol	57.7	42.55
HORVU6Hr1G020090.2	Barley	plastid	58.48	41.92
CDX82078	Canola	mitochondrion	5.13	27.73
CDY14072	Canola	cytosol	5.91	20.88
CDX70761	Canola	nucleus	15.09	14.31
CDX78748	Canola	nucleus	14.93	13.85
CDY16926	Canola	cytosol	10.58	13.03
CDY38427	Canola	cytosol	11.04	12.37
CDX78203	Canola	extracellular, vacuole	12.29	10.62
CDX73526	Canola	extracellular, vacuole	12.13	10.48

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.3	GO:A0A078C1L6	EnsemblPlants:CDX70079	ProteinID:CDX70079	ProteinID:CDX70079.1
ncoils:Coil	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005815	GO:GO:0005856
GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	GO:GO:0090063
EnsemblPlantsGene:GSBRNA2T00136184001	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI0004EF0084	SEG:seg

Description

BnaA10g24280D

Coordinates

chrLK031790:-:3005641..3007992

Molecular Weight (calculated)

72517.1 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.172

Length

643 amino acids

Sequence
(BLAST)

001: MINQNATEEE DDDDHQEAAD LVHTLVLRLL FQNPNPPDPT SPAFLKTLRY ASRILSSRIA PSSLSPDAAS IAESLKRRLA TQGKSSSALA FADLYTKLAS
101: KTGPGSVANK RSLLHLLKTV SDDRKSSINS FDSSLLLTNL SPCNAPKKKD RTSNGALMIS KDPENLKDIA FREYKILIKE ENEVTEEVLV RDVLYACQGI
201: DGKFVTFNSE IEGYAVVDYI NTPQSMVDRL ETVGQAFCAA LQDELTDYYK LLAVLEAQAM NPIPLVSELV GGSSEYLSLR RLSVWFAEPM VKMRLMAVLV
301: DKCKVLRGGA MAGAIHLHVQ HGDPLVREFM MNLLRCVCSP LFEMVRSWVL EGELEDSFGE FFVVSHPVKV GLLWREGYKL HVEMLPSFIS PSLAQRILRT
401: GKSINFLRVC CDDHGWCDAA LQAAAASGTT TRRGGLGYGE TDALEHLVTE AALRRCQVLW NEMNHFVTNF QYYIMFEVLE VSWCNFSKEM EAARDLDDLL
501: AAHEKYLSSI VGKSLLGEQS QTIRKSLFVL FELILRFRSH ADRLYEGIYE LQIRTKESGR GRNKTQESSS WISEGRKAIT QRAGEFLQSM SRDMDSIAKE
601: YTTSLDAFLS LLPLQQTVDL KFLFFRLDFT EFYSRLHFKR KES

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.