Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14071 | Canola | cytosol | 65.16 | 89.22 |
| Bra028722.1-P | Field mustard | cytosol | 64.92 | 89.03 |
| CDY04999 | Canola | cytosol | 81.62 | 83.72 |
| Bra009216.1-P | Field mustard | cytosol | 61.93 | 80.72 |
| CDX70079 | Canola | cytosol | 61.93 | 80.72 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 77.09 | 75.64 |
| CDX98945 | Canola | cytosol | 9.19 | 75.49 |
| KRH67085 | Soybean | cytosol | 71.96 | 71.45 |
| KRG95411 | Soybean | cytosol | 71.36 | 71.02 |
| GSMUA_Achr10P... | Banana | cytosol | 53.22 | 70.57 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 58.23 | 68.83 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 50.95 | 67.89 |
| TraesCS6D01G100700.1 | Wheat | cytosol | 63.96 | 66.01 |
| TraesCS6B01G140000.1 | Wheat | cytosol | 64.08 | 65.73 |
| TraesCS6A01G111800.1 | Wheat | cytosol | 63.48 | 65.52 |
| KXG35736 | Sorghum | cytosol | 64.92 | 65.23 |
| TraesCS5B01G230400.1 | Wheat | cytosol | 63.84 | 64.85 |
| TraesCS5D01G235900.1 | Wheat | cytosol | 63.6 | 64.61 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 64.2 | 63.97 |
| PGSC0003DMT400007029 | Potato | nucleus | 70.53 | 63.21 |
| Solyc09g009140.2.1 | Tomato | nucleus | 70.53 | 63.21 |
| Zm00001d020664_P016 | Maize | cytosol | 64.08 | 63.1 |
| TraesCS5A01G232100.1 | Wheat | cytosol | 63.84 | 61.35 |
| HORVU6Hr1G020090.2 | Barley | plastid | 64.92 | 60.65 |
| AT5G17410.2 | Thale cress | nucleus, plastid | 17.42 | 21.5 |
| AT3G53760.1 | Thale cress | vacuole | 15.87 | 17.85 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.3 | EntrezGene:830557 | ProteinID:AED91049.1 | ArrayExpress:AT5G06680 | EnsemblPlantsGene:AT5G06680 |
| RefSeq:AT5G06680 | TAIR:AT5G06680 | RefSeq:AT5G06680-TAIR-G | EnsemblPlants:AT5G06680.1 | TAIR:AT5G06680.1 | EMBL:AY099727 |
| Unigene:At.32825 | ProteinID:BAB09802.1 | EMBL:BT010545 | ncoils:Coil | InterPro:GCP | GO:GO:0000003 |
| GO:GO:0000226 | GO:GO:0000922 | GO:GO:0000923 | GO:GO:0000930 | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005819 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0005886 | GO:GO:0005938 | GO:GO:0007020 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008275 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009624 | GO:GO:0009898 | GO:GO:0009987 |
| GO:GO:0015631 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0031122 | GO:GO:0043015 | GO:GO:0051011 |
| GO:GO:0051321 | GO:GO:0051415 | GO:GO:0055028 | GO:GO:0090063 | GO:GO:0090307 | RefSeq:NP_196286.1 |
| PFAM:PF04130 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR19302 |
| PANTHER:PTHR19302:SF14 | UniProt:Q9FG37 | Symbol:SPC98 | UniParc:UPI00000A53DB | SEG:seg | : |
Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
Coordinates
chr5:+:2056528..2059859
Molecular Weight (calculated)
94652.1 Da
IEP (calculated)
6.953
GRAVY (calculated)
-0.162
Length
838 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.