Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400068084 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06680.1 | PGSC0003DMT400068084 | AT1G73790.1 | 22404201 |
| AT5G06680.1 | PGSC0003DMT400068084 | AT1G73790.1 | 22427335 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g009140.2.1 | Tomato | nucleus | 97.75 | 97.75 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 69.41 | 76.0 |
| CDY14071 | Canola | cytosol | 47.06 | 71.9 |
| Bra028722.1-P | Field mustard | cytosol | 46.95 | 71.85 |
| AT5G06680.1 | Thale cress | cytosol | 63.21 | 70.53 |
| KRH67085 | Soybean | cytosol | 62.35 | 69.08 |
| KRG95411 | Soybean | cytosol | 61.93 | 68.76 |
| CDY04999 | Canola | cytosol | 57.54 | 65.85 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 49.73 | 65.59 |
| GSMUA_Achr10P... | Banana | cytosol | 44.06 | 65.19 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 43.21 | 64.23 |
| Bra009216.1-P | Field mustard | cytosol | 44.06 | 64.07 |
| CDX70079 | Canola | cytosol | 43.96 | 63.92 |
| KXG35736 | Sorghum | cytosol | 55.94 | 62.71 |
| TraesCS6D01G100700.1 | Wheat | cytosol | 54.22 | 62.44 |
| TraesCS6B01G140000.1 | Wheat | cytosol | 54.44 | 62.3 |
| TraesCS6A01G111800.1 | Wheat | cytosol | 54.01 | 62.19 |
| TraesCS5B01G230400.1 | Wheat | cytosol | 54.65 | 61.94 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 55.62 | 61.83 |
| TraesCS5D01G235900.1 | Wheat | cytosol | 54.44 | 61.7 |
| Zm00001d020664_P016 | Maize | cytosol | 55.83 | 61.34 |
| CDX98945 | Canola | cytosol | 6.42 | 58.82 |
| TraesCS5A01G232100.1 | Wheat | cytosol | 54.76 | 58.72 |
| HORVU6Hr1G020090.2 | Barley | plastid | 55.29 | 57.64 |
| PGSC0003DMT400050760 | Potato | cytosol | 15.29 | 20.23 |
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 6.31 | 18.38 |
Protein Annotations
| Gene3D:1.20.120.1900 | EntrezGene:102592969 | MapMan:20.1.2.1.3 | ncoils:Coil | InterPro:GCP | GO:GO:0000226 |
| GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 | UniProt:M0ZSC1 | PFAM:PF04130 |
| EnsemblPlantsGene:PGSC0003DMG400002716 | PGSC:PGSC0003DMG400002716 | EnsemblPlants:PGSC0003DMT400007029 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF14 | UniParc:UPI000294FCD7 |
| RefSeq:XP_006341162.1 | SEG:seg | : | : | : | : |
Description
Gamma-tubulin complex component [Source:PGSC_GENE;Acc:PGSC0003DMG400002716]
Coordinates
chr9:-:3811715..3815312
Molecular Weight (calculated)
105471.0 Da
IEP (calculated)
8.473
GRAVY (calculated)
-0.297
Length
935 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDRRALD LVKELVHRLL STSPPSSTAN SHQSTTLNPN PIIPSDQQYH QALRYAIRIL SSRMTPSIAA DESAMVESIK RRLATQGKSS DALTFADVYT
101: KFSLKTGQGS VRNKWAVLYL LKTVSEDRKI QKHQSTSVAP NGFLSSALSG GLPELVGSES NRNFGLRNDC SKVLNNVQGY TDNSKDSRGL VGKLGKMEKG
201: YSDGSLSDDF QSLNCVGDNS RVLRGKGEVG KGWSGGVLMV SKDPENLRDM AYKEFVNLSK EENEVSEDVL VRDVLYACQG IDGKYVKYDK NEDGYVLPDW
301: MKVPRATRSV VRKLCELGWL FRKVKGYISD SMNQFPAQDV GTVGQAFCAA LQDELSEYYK LLAVLEGQAM NPIPLGSESA CSGSYMSLRR LSVWFAEPIV
401: KMRLMAVLVD NCKSLKGGAM AGAIHMHAQH GDPLVNDFMK RLLRRVCSPL FEMVRRWVLE GELEDIFAEF FIVSQPVKDE SLWREGYRLH AAMLPAFISQ
501: SLAKQILRTG KSINFLRVCC DDRGWADAAT EAATAVGTTT TRGSLGYGET DALESLVTEA AKRIDKHLLE LMHKRYKFKE HCLAIKRYLL LGQGDFVQYL
601: MDIVGPELSE PANTISSFKL ATLLESAITS SNAQYDGCDI RARLRVKMMP HKTGDRGWDV FSLEYDAGVP LNTIFTESVM TRYIRVFNFL WKLRRVEHAL
701: TGTWKTMKPN CITSHFFSKL PQAVKLQLIL TSRKCQVLWD EMNHFVSNLQ YYIMFEVLEV SWSNLVKEME LSKDLDDLLA AHEKYLFSIL EKSLLGERSQ
801: ELNKTLFVLF DLILRFRSLA DRLYEGINEL QSRTSETSTN SRDKVKSRGK SNDKTSEPGS WLGEGRKALT QRAGEFLKNM GNDMDVIGKD YTSIFEGFIS
901: QLPVQQHIDL KFLMFRLNFT EFYSQIQPIT RGKLF
101: KFSLKTGQGS VRNKWAVLYL LKTVSEDRKI QKHQSTSVAP NGFLSSALSG GLPELVGSES NRNFGLRNDC SKVLNNVQGY TDNSKDSRGL VGKLGKMEKG
201: YSDGSLSDDF QSLNCVGDNS RVLRGKGEVG KGWSGGVLMV SKDPENLRDM AYKEFVNLSK EENEVSEDVL VRDVLYACQG IDGKYVKYDK NEDGYVLPDW
301: MKVPRATRSV VRKLCELGWL FRKVKGYISD SMNQFPAQDV GTVGQAFCAA LQDELSEYYK LLAVLEGQAM NPIPLGSESA CSGSYMSLRR LSVWFAEPIV
401: KMRLMAVLVD NCKSLKGGAM AGAIHMHAQH GDPLVNDFMK RLLRRVCSPL FEMVRRWVLE GELEDIFAEF FIVSQPVKDE SLWREGYRLH AAMLPAFISQ
501: SLAKQILRTG KSINFLRVCC DDRGWADAAT EAATAVGTTT TRGSLGYGET DALESLVTEA AKRIDKHLLE LMHKRYKFKE HCLAIKRYLL LGQGDFVQYL
601: MDIVGPELSE PANTISSFKL ATLLESAITS SNAQYDGCDI RARLRVKMMP HKTGDRGWDV FSLEYDAGVP LNTIFTESVM TRYIRVFNFL WKLRRVEHAL
701: TGTWKTMKPN CITSHFFSKL PQAVKLQLIL TSRKCQVLWD EMNHFVSNLQ YYIMFEVLEV SWSNLVKEME LSKDLDDLLA AHEKYLFSIL EKSLLGERSQ
801: ELNKTLFVLF DLILRFRSLA DRLYEGINEL QSRTSETSTN SRDKVKSRGK SNDKTSEPGS WLGEGRKALT QRAGEFLKNM GNDMDVIGKD YTSIFEGFIS
901: QLPVQQHIDL KFLMFRLNFT EFYSQIQPIT RGKLF
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.