CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH65887
KRH66740
KRH75670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	KRH65887	AT1G73790.1	22404201
AT5G06680.1	KRH66740	AT1G73790.1	22404201
AT5G06680.1	KRH75670	AT1G73790.1	22404201
AT5G06680.1	KRH65887	AT1G73790.1	22427335
AT5G06680.1	KRH66740	AT1G73790.1	22427335
AT5G06680.1	KRH75670	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95411	Soybean	cytosol	92.77	92.99
VIT_08s0007g06730.t01	Wine grape	cytosol	75.71	74.82
CDY14071	Canola	cytosol	53.55	73.86
Bra028722.1-P	Field mustard	cytosol	53.2	73.49
AT5G06680.1	Thale cress	cytosol	71.45	71.96
GSMUA_Achr10P...	Banana	cytosol	51.07	68.2
CDY04999	Canola	cytosol	65.88	68.05
GSMUA_Achr8P22770_001	Banana	cytosol	49.88	66.93
HORVU5Hr1G066810.2	Barley	cytosol	55.09	65.59
Bra009216.1-P	Field mustard	cytosol	48.7	63.92
CDX70079	Canola	cytosol	48.58	63.76
KXG35736	Sorghum	cytosol	61.97	62.71
TraesCS6A01G111800.1	Wheat	cytosol	60.31	62.68
Solyc09g009140.2.1	Tomato	nucleus	69.19	62.46
TraesCS6B01G140000.1	Wheat	cytosol	60.43	62.42
PGSC0003DMT400007029	Potato	nucleus	69.08	62.35
TraesCS6D01G100700.1	Wheat	cytosol	59.95	62.32
Os09t0446200-01	Rice	cytosol, nucleus	61.61	61.83
TraesCS5B01G230400.1	Wheat	cytosol	60.31	61.7
TraesCS5D01G235900.1	Wheat	cytosol	59.95	61.33
Zm00001d020664_P016	Maize	cytosol	61.61	61.1
CDX98945	Canola	cytosol	7.23	59.8
TraesCS5A01G232100.1	Wheat	cytosol	59.72	57.8
HORVU6Hr1G020090.2	Barley	plastid	61.14	57.53
KRH66204	Soybean	cytosol, nucleus, peroxisome	16.82	21.39
KRG89851	Soybean	cytosol	11.61	21.21
KRH07351	Soybean	cytosol	16.47	20.93
KRG89853	Soybean	cytosol, extracellular, nucleus	4.03	20.0
KRH16759	Soybean	mitochondrion, nucleus	4.03	19.54
KRH31863	Soybean	endoplasmic reticulum	15.52	17.9
KRH69283	Soybean	plasma membrane	15.52	17.87

Protein Annotations

Gene3D:1.20.120.1900	EntrezGene:100784710	MapMan:20.1.2.1.3	EMBL:ACUP02002027	ncoils:Coil	InterPro:GCP
EnsemblPlantsGene:GLYMA_03G146200	GO:GO:0000003	GO:GO:0000226	GO:GO:0000922	GO:GO:0000923	GO:GO:0003674
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020
GO:GO:0007049	GO:GO:0008150	GO:GO:0008275	GO:GO:0009987	GO:GO:0016043	GO:GO:0031122
GO:GO:0043015	GO:GO:0051011	GO:GO:0051321	GO:GO:0051415	GO:GO:0090307	UniProt:I1JNM3
ProteinID:KRH67084.1	EnsemblPlants:KRH67085	ProteinID:KRH67085	ProteinID:KRH67085.1	ProteinID:KRH67086.1	PFAM:PF04130
PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI000233A1A7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:36153347..36158508

Molecular Weight (calculated)

96433.7 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.228

Length

844 amino acids

Sequence
(BLAST)

001: MMEEEEDQQK LPDLVKELVH RLLSQNLPPN SPPLNPNSPE FRNSLRYALR ILSSRLTPSV APDAAAIADS IKRRLATHGH SSEALSFADL FSKFSSKAQS
101: VNNKFAVIYL LKIVSEDRHT TTATTTPLLP NLSFSEPTSN KKPWNDNGAL LISKDPENRR DVAFREFVDL VKEENEVSEE VLVQDVLYAC QGVDGKFVKF
201: DGESKRYVIP DSIRVPRATR SMVYNLCELG VLFRNVSGYI SLSMDRFPNE DVGTVGQAFC SALQDELSEY YKLLAVLEAQ ASNPIPLVSE SASSGNYLSL
301: RRLAVWVAEP LVKMRLMADL VEKCRVLRGG AMAGAIHLHA QHGDPLVHEF MRRLLQRVCS SLFEMVRRWV LEGELEDIFA EFFIVGQPVK AESLWREGYR
401: LHDSMLPLFI SPSLAQRILR TGKSINFLRV CCEDHGWADA ATEVVADHGA TARRGGFGYG ETDTLEFLVD EASKRIDKHL LDVIFKRYKF KEHCLAIKQY
501: LLLGQGDFVQ YLMDIVGPEL SEPANTISSF KLSGLLETAI RASNAQYDDP EILDRLRVKM MPHESGDRGW DVFSLEYDAR VPLDTVFTES VMARYLRIFN
601: FLWKLRRVEH ALTGAWKTMK PNCITSNSFT RLQHAVKMQL VSTLRRCQVL WVEINHFISN LQYYIMFEVL EVSWSNFLAE MEVAKDLDDL LAAHEKYLHS
701: IVEKSLLGEL SQSLYKSLFV IFDLILRFRS RADRLYEGIH ELQARFTESS LSSRDKNQSR SRKQLSDKSA EQGSWIADGR KALTQRAGEF LRNMEQDLDA
801: IAKEYSSLQE GFISQLPVQQ HVDLKFLFFR LDFNEFYRRL CPSM

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.