Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73790.1 | KRH52586 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | KRH61926 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | KRH38611 | AT4G10930.1 | 21798944 |
| AT1G73790.1 | KRH41328 | AT4G10930.1 | 21798944 |
| AT1G73790.1 | KRH60053 | AT4G10930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75670 | Soybean | cytosol | 80.85 | 51.35 |
| KRH65887 | Soybean | cytosol | 78.72 | 50.68 |
| CDY11089 | Canola | cytosol | 55.32 | 40.62 |
| Bra015965.1-P | Field mustard | cytosol | 57.45 | 39.13 |
| CDX73014 | Canola | cytosol | 57.45 | 39.13 |
| CDY60144 | Canola | cytosol | 57.45 | 39.13 |
| Bra003829.1-P | Field mustard | cytosol | 55.32 | 38.24 |
| CDX68212 | Canola | cytosol | 55.32 | 38.24 |
| PGSC0003DMT400068084 | Potato | cytosol | 61.7 | 38.16 |
| VIT_10s0003g05660.t01 | Wine grape | cytosol | 57.45 | 36.99 |
| AT4G09550.2 | Thale cress | cytosol | 55.32 | 36.62 |
| AT1G73790.1 | Thale cress | cytosol | 48.94 | 34.33 |
| VIT_08s0040g01030.t01 | Wine grape | extracellular | 65.96 | 28.97 |
| Zm00001d012933_P001 | Maize | cytosol | 53.19 | 26.04 |
| EER90611 | Sorghum | cytosol | 51.06 | 25.26 |
| TraesCS1A01G246000.1 | Wheat | cytosol | 51.06 | 25.26 |
| TraesCS1D01G245500.1 | Wheat | cytosol | 48.94 | 24.73 |
| TraesCS5B01G500000.1 | Wheat | cytosol | 48.94 | 24.73 |
| Os03t0824000-01 | Rice | cytosol | 48.94 | 24.21 |
| TraesCS5D01G500200.1 | Wheat | cytosol | 48.94 | 24.21 |
| Solyc03g097400.1.1 | Tomato | endoplasmic reticulum | 29.79 | 24.14 |
| HORVU5Hr1G114640.1 | Barley | cytosol | 48.94 | 23.96 |
| Os03t0435900-01 | Rice | cytosol | 48.94 | 23.23 |
| Os11t0368172-01 | Rice | cytosol | 48.94 | 23.23 |
| Zm00001d034680_P001 | Maize | cytosol | 44.68 | 21.88 |
| HORVU5Hr1G114660.1 | Barley | peroxisome | 44.68 | 15.67 |
| Os11t0362633-00 | Rice | cytosol | 38.3 | 13.74 |
| Os03t0435800-00 | Rice | cytosol | 38.3 | 13.74 |
Protein Annotations
| EMBL:ACUP02002008 | EnsemblPlants:KRH66740 | EnsemblPlantsGene:GLYMA_03G125300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0008274 | GO:GO:0033566 | InterPro:MZT1 |
| PANTHER:PTHR28520 | PANTHER:PTHR28520:SF5 | ProteinID:KRH66740 | ProteinID:KRH66740.1 | SEG:seg | UniParc:UPI0006ED9C5F |
| UniProt:A0A0R0KS91 | MapMan:13.3.3.1.1 | MapMan:20.1.2.2.10 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:33890604..33893215
Molecular Weight (calculated)
4930.9 Da
IEP (calculated)
7.551
GRAVY (calculated)
-0.174
Length
47 amino acids
Sequence
(BLAST)
(BLAST)
1: MDPEAARTAR ESLDLAFHMS NILDTGLRKG KPSLLSSSLA SASSSLP
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
Arabidopsis Description
GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.