Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 | |
| Zm00001d053989_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73790.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | Zm00001d053989_P003 | AT4G10930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012933_P001 | Maize | cytosol | 85.42 | 85.42 |
| TraesCS1D01G245500.1 | Wheat | cytosol | 73.96 | 76.34 |
| HORVU5Hr1G114640.1 | Barley | cytosol | 73.96 | 73.96 |
| TraesCS1A01G246000.1 | Wheat | cytosol | 72.92 | 73.68 |
| TraesCS5B01G500000.1 | Wheat | cytosol | 70.83 | 73.12 |
| TraesCS5D01G500200.1 | Wheat | cytosol | 68.75 | 69.47 |
| CDY11089 | Canola | cytosol | 40.62 | 60.94 |
| AT1G73790.1 | Thale cress | cytosol | 40.62 | 58.21 |
| Bra015965.1-P | Field mustard | cytosol | 41.67 | 57.97 |
| CDX73014 | Canola | cytosol | 41.67 | 57.97 |
| CDY60144 | Canola | cytosol | 41.67 | 57.97 |
| KRH65887 | Soybean | cytosol | 43.75 | 57.53 |
| Bra003829.1-P | Field mustard | cytosol | 40.62 | 57.35 |
| CDX68212 | Canola | cytosol | 40.62 | 57.35 |
| KRH75670 | Soybean | cytosol | 43.75 | 56.76 |
| AT4G09550.2 | Thale cress | cytosol | 40.62 | 54.93 |
| VIT_10s0003g05660.t01 | Wine grape | cytosol | 39.58 | 52.05 |
| Solyc03g097400.1.1 | Tomato | endoplasmic reticulum | 31.25 | 51.72 |
| PGSC0003DMT400068084 | Potato | cytosol | 40.62 | 51.32 |
| KRH66740 | Soybean | cytosol | 21.88 | 44.68 |
| HORVU5Hr1G114660.1 | Barley | peroxisome | 60.42 | 43.28 |
| VIT_08s0040g01030.t01 | Wine grape | extracellular | 42.71 | 38.32 |
| Os11t0362633-00 | Rice | cytosol | 38.54 | 28.24 |
| Os03t0435800-00 | Rice | cytosol | 38.54 | 28.24 |
Protein Annotations
| EnsemblPlants:Zm00001d034680_P001 | EnsemblPlants:Zm00001d034680_T001 | EnsemblPlantsGene:Zm00001d034680 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0008274 | GO:GO:0033566 | InterPro:MZT1 |
| PANTHER:PTHR28520 | PFAM:PF12554 | ProteinID:ONM10986.1 | SEG:seg | UniParc:UPI0003C6683D | UniProt:A0A1D6LA23 |
| MapMan:13.3.3.1.1 | MapMan:20.1.2.2.10 | : | : | : | : |
Description
Mitotic-spindle organizing protein 1A
Coordinates
chr1:-:299646950..299647240
Molecular Weight (calculated)
9920.8 Da
IEP (calculated)
4.735
GRAVY (calculated)
-0.090
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: METEKEAAAA RQAKESLELA FQMSQILETG LDRHTLSLLM ALCDRGANPE ALAALVRELS STAPPTAAEA PSPVSNAAAG PAPATASMFS SGLRRP
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
Arabidopsis Description
GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.