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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 3
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400068084 Potato cytosol 100.0 76.32
Solyc06g072690.1.1 Tomato cytosol, endoplasmic reticulum 62.07 65.45
CDY11089 Canola cytosol 65.52 59.38
Bra015965.1-P Field mustard cytosol 65.52 55.07
CDX73014 Canola cytosol 65.52 55.07
CDY60144 Canola cytosol 65.52 55.07
KRH65887 Soybean cytosol 68.97 54.79
Bra003829.1-P Field mustard cytosol 63.79 54.41
CDX68212 Canola cytosol 63.79 54.41
KRH75670 Soybean cytosol 68.97 54.05
AT4G09550.2 Thale cress cytosol 63.79 52.11
VIT_10s0003g05660.t01 Wine grape cytosol 62.07 49.32
AT1G73790.1 Thale cress cytosol 56.9 49.25
VIT_08s0040g01030.t01 Wine grape extracellular 70.69 38.32
TraesCS1D01G245500.1 Wheat cytosol 53.45 33.33
TraesCS5B01G500000.1 Wheat cytosol 53.45 33.33
TraesCS1A01G246000.1 Wheat cytosol 53.45 32.63
TraesCS5D01G500200.1 Wheat cytosol 53.45 32.63
Zm00001d012933_P001 Maize cytosol 53.45 32.29
HORVU5Hr1G114640.1 Barley cytosol 53.45 32.29
Os03t0824000-01 Rice cytosol 51.72 31.58
EER90611 Sorghum cytosol 51.72 31.58
Os11t0368172-01 Rice cytosol 53.45 31.31
Os03t0435900-01 Rice cytosol 53.45 31.31
Zm00001d034680_P001 Maize cytosol 51.72 31.25
KRH66740 Soybean cytosol 24.14 29.79
HORVU5Hr1G114660.1 Barley peroxisome 48.28 20.9
Os11t0362633-00 Rice cytosol 37.93 16.79
Os03t0435800-00 Rice cytosol 37.93 16.79
Protein Annotations
MapMan:13.3.3.1.1MapMan:20.1.2.2.10GO:GO:0000923GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856GO:GO:0007049
GO:GO:0008150GO:GO:0008274GO:GO:0009987GO:GO:0016043GO:GO:0031021GO:GO:0033566
GO:GO:0043015GO:GO:0051415GO:GO:0090307UniProt:K4BJF7InterPro:MZT1PFAM:PF12554
PANTHER:PTHR28520PANTHER:PTHR28520:SF5EnsemblPlantsGene:Solyc03g097400.1EnsemblPlants:Solyc03g097400.1.1UniParc:UPI000276837F:
Description
No Description!
Coordinates
chr3:+:59730433..59730609
Molecular Weight (calculated)
6182.4 Da
IEP (calculated)
5.521
GRAVY (calculated)
-0.071
Length
58 amino acids
Sequence
(BLAST)
1: MSNILDTGLD RHSLSVLISL CDLGLNPEAL AAVIKELRQE NPSSASASHQ RTMPPSVP
Best Arabidopsis Sequence Match ( AT4G09550.1 )
(BLAST)
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
Arabidopsis Description
GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.