Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc06g073150.2.1 | |
Solyc11g017300.1.1 | |
Solyc12g055910.1.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G73790.1 | Solyc06g073150.2.1 | AT1G22920.1 | 21798944 |
AT1G73790.1 | Solyc11g017300.1.1 | AT1G22920.1 | 21798944 |
AT1G73790.1 | Solyc12g055910.1.1 | AT4G10930.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400068084 | Potato | cytosol | 100.0 | 76.32 |
Solyc06g072690.1.1 | Tomato | cytosol, endoplasmic reticulum | 62.07 | 65.45 |
CDY11089 | Canola | cytosol | 65.52 | 59.38 |
Bra015965.1-P | Field mustard | cytosol | 65.52 | 55.07 |
CDX73014 | Canola | cytosol | 65.52 | 55.07 |
CDY60144 | Canola | cytosol | 65.52 | 55.07 |
KRH65887 | Soybean | cytosol | 68.97 | 54.79 |
Bra003829.1-P | Field mustard | cytosol | 63.79 | 54.41 |
CDX68212 | Canola | cytosol | 63.79 | 54.41 |
KRH75670 | Soybean | cytosol | 68.97 | 54.05 |
AT4G09550.2 | Thale cress | cytosol | 63.79 | 52.11 |
VIT_10s0003g05660.t01 | Wine grape | cytosol | 62.07 | 49.32 |
AT1G73790.1 | Thale cress | cytosol | 56.9 | 49.25 |
VIT_08s0040g01030.t01 | Wine grape | extracellular | 70.69 | 38.32 |
TraesCS1D01G245500.1 | Wheat | cytosol | 53.45 | 33.33 |
TraesCS5B01G500000.1 | Wheat | cytosol | 53.45 | 33.33 |
TraesCS1A01G246000.1 | Wheat | cytosol | 53.45 | 32.63 |
TraesCS5D01G500200.1 | Wheat | cytosol | 53.45 | 32.63 |
Zm00001d012933_P001 | Maize | cytosol | 53.45 | 32.29 |
HORVU5Hr1G114640.1 | Barley | cytosol | 53.45 | 32.29 |
Os03t0824000-01 | Rice | cytosol | 51.72 | 31.58 |
EER90611 | Sorghum | cytosol | 51.72 | 31.58 |
Os11t0368172-01 | Rice | cytosol | 53.45 | 31.31 |
Os03t0435900-01 | Rice | cytosol | 53.45 | 31.31 |
Zm00001d034680_P001 | Maize | cytosol | 51.72 | 31.25 |
KRH66740 | Soybean | cytosol | 24.14 | 29.79 |
HORVU5Hr1G114660.1 | Barley | peroxisome | 48.28 | 20.9 |
Os11t0362633-00 | Rice | cytosol | 37.93 | 16.79 |
Os03t0435800-00 | Rice | cytosol | 37.93 | 16.79 |
Protein Annotations
MapMan:13.3.3.1.1 | MapMan:20.1.2.2.10 | GO:GO:0000923 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0007049 |
GO:GO:0008150 | GO:GO:0008274 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031021 | GO:GO:0033566 |
GO:GO:0043015 | GO:GO:0051415 | GO:GO:0090307 | UniProt:K4BJF7 | InterPro:MZT1 | PFAM:PF12554 |
PANTHER:PTHR28520 | PANTHER:PTHR28520:SF5 | EnsemblPlantsGene:Solyc03g097400.1 | EnsemblPlants:Solyc03g097400.1.1 | UniParc:UPI000276837F | : |
Description
No Description!
Coordinates
chr3:+:59730433..59730609
Molecular Weight (calculated)
6182.4 Da
IEP (calculated)
5.521
GRAVY (calculated)
-0.071
Length
58 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNILDTGLD RHSLSVLISL CDLGLNPEAL AAVIKELRQE NPSSASASHQ RTMPPSVP
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
Arabidopsis Description
GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.