Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73790.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g097400.1.1 | Tomato | endoplasmic reticulum | 76.32 | 100.0 |
| CDY11089 | Canola | cytosol | 68.42 | 81.25 |
| Bra015965.1-P | Field mustard | cytosol | 68.42 | 75.36 |
| CDX73014 | Canola | cytosol | 68.42 | 75.36 |
| CDY60144 | Canola | cytosol | 68.42 | 75.36 |
| KRH65887 | Soybean | cytosol | 72.37 | 75.34 |
| Bra003829.1-P | Field mustard | cytosol | 67.11 | 75.0 |
| CDX68212 | Canola | cytosol | 67.11 | 75.0 |
| KRH75670 | Soybean | cytosol | 72.37 | 74.32 |
| AT4G09550.2 | Thale cress | cytosol | 67.11 | 71.83 |
| AT1G73790.1 | Thale cress | cytosol | 60.53 | 68.66 |
| VIT_10s0003g05660.t01 | Wine grape | cytosol | 63.16 | 65.75 |
| KRH66740 | Soybean | cytosol | 38.16 | 61.7 |
| VIT_08s0040g01030.t01 | Wine grape | extracellular | 73.68 | 52.34 |
| TraesCS1D01G245500.1 | Wheat | cytosol | 52.63 | 43.01 |
| TraesCS5B01G500000.1 | Wheat | cytosol | 52.63 | 43.01 |
| TraesCS5D01G500200.1 | Wheat | cytosol | 52.63 | 42.11 |
| TraesCS1A01G246000.1 | Wheat | cytosol | 52.63 | 42.11 |
| HORVU5Hr1G114640.1 | Barley | cytosol | 52.63 | 41.67 |
| Zm00001d012933_P001 | Maize | cytosol | 52.63 | 41.67 |
| EER90611 | Sorghum | cytosol | 51.32 | 41.05 |
| Os03t0824000-01 | Rice | cytosol | 51.32 | 41.05 |
| Zm00001d034680_P001 | Maize | cytosol | 51.32 | 40.62 |
| Os11t0368172-01 | Rice | cytosol | 52.63 | 40.4 |
| Os03t0435900-01 | Rice | cytosol | 52.63 | 40.4 |
| HORVU5Hr1G114660.1 | Barley | peroxisome | 48.68 | 27.61 |
| Os11t0362633-00 | Rice | cytosol | 40.79 | 23.66 |
| Os03t0435800-00 | Rice | cytosol | 40.79 | 23.66 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068084 | EnsemblPlantsGene:PGSC0003DMG400026480 | EntrezGene:102595534 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0008274 | GO:GO:0033566 | InterPro:MZT1 |
| PANTHER:PTHR28520 | PANTHER:PTHR28520:SF5 | PFAM:PF12554 | PGSC:PGSC0003DMG400026480 | RefSeq:XP_006347618.1 | UniParc:UPI000296A6BC |
| UniProt:M1CIE8 | MapMan:13.3.3.1.1 | MapMan:20.1.2.2.10 | : | : | : |
Description
Mitotic-spindle organizing protein 1B [Source:PGSC_GENE;Acc:PGSC0003DMG400026480]
Coordinates
chr3:-:46280076..46280875
Molecular Weight (calculated)
8222.8 Da
IEP (calculated)
4.945
GRAVY (calculated)
-0.151
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MDPEAARTAR DSLELVFHMS NILDTGLDRH SLSVLISLCD LGLNPEALAA VIKELRQENP SSASASHQRT MPPSVP
1: MDEEASRTAR ESLELVFRMS NILDTGLDRH TLSVLIALCD LGVNPEALAT VVKELRRESI PDSVTTTPSI H
Arabidopsis Description
GIP1Mitotic-spindle organizing protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M0N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.