Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73790.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDY25761 | AT1G22920.1 | 21798944 |
| AT1G73790.1 | CDX90783 | AT4G10930.1 | 21798944 |
| AT1G73790.1 | CDY05126 | AT4G10930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60144 | Canola | cytosol | 97.1 | 97.1 |
| CDY11089 | Canola | cytosol | 81.16 | 87.5 |
| CDX68212 | Canola | cytosol | 79.71 | 80.88 |
| AT1G73790.1 | Thale cress | cytosol | 71.01 | 73.13 |
| KRH75670 | Soybean | cytosol | 78.26 | 72.97 |
| KRH65887 | Soybean | cytosol | 76.81 | 72.6 |
| AT4G09550.2 | Thale cress | cytosol | 72.46 | 70.42 |
| PGSC0003DMT400068084 | Potato | cytosol | 75.36 | 68.42 |
| VIT_10s0003g05660.t01 | Wine grape | cytosol | 71.01 | 67.12 |
| Solyc03g097400.1.1 | Tomato | endoplasmic reticulum | 55.07 | 65.52 |
| KRH66740 | Soybean | cytosol | 39.13 | 57.45 |
| VIT_08s0040g01030.t01 | Wine grape | extracellular | 78.26 | 50.47 |
| Zm00001d012933_P001 | Maize | cytosol | 59.42 | 42.71 |
| EER90611 | Sorghum | cytosol | 57.97 | 42.11 |
| TraesCS5B01G500000.1 | Wheat | cytosol | 56.52 | 41.94 |
| TraesCS1D01G245500.1 | Wheat | cytosol | 56.52 | 41.94 |
| Zm00001d034680_P001 | Maize | cytosol | 57.97 | 41.67 |
| TraesCS1A01G246000.1 | Wheat | cytosol | 56.52 | 41.05 |
| Os03t0824000-01 | Rice | cytosol | 56.52 | 41.05 |
| TraesCS5D01G500200.1 | Wheat | cytosol | 56.52 | 41.05 |
| HORVU5Hr1G114640.1 | Barley | cytosol | 56.52 | 40.62 |
| Os11t0368172-01 | Rice | cytosol | 56.52 | 39.39 |
| Os03t0435900-01 | Rice | cytosol | 56.52 | 39.39 |
| HORVU5Hr1G114660.1 | Barley | peroxisome | 55.07 | 28.36 |
| Os11t0362633-00 | Rice | cytosol | 42.03 | 22.14 |
| Os03t0435800-00 | Rice | cytosol | 42.03 | 22.14 |
Protein Annotations
| EnsemblPlants:CDX73014 | EnsemblPlantsGene:GSBRNA2T00103455001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0008274 | GO:GO:0033566 | InterPro:MZT1 | PANTHER:PTHR28520 |
| PANTHER:PTHR28520:SF5 | PFAM:PF12554 | ProteinID:CDX73014 | ProteinID:CDX73014.1 | UniParc:UPI0004EE0362 | MapMan:13.3.3.1.1 |
| MapMan:20.1.2.2.10 | : | : | : | : | : |
Description
BnaC06g34620D
Coordinates
chrLK031797:+:1667827..1668375
Molecular Weight (calculated)
7380.8 Da
IEP (calculated)
4.478
GRAVY (calculated)
-0.128
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKEAAETAR DSLELAFRMS NILETGLDRH TLSVLIALCD LGLNPEALAA VVKELRQESG NSHGNSSLG
1: MNQEAAETAR ESLELVFRMS NILETGLDRH TLSVLIALCD IGLNPEALAT LVKELRRDSA TTTTTVD
Arabidopsis Description
GIP2Mitotic-spindle organizing protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9C9T3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.