CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68212
CDX73014
CDY11089
CDY60144

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	CDX68212	AT1G73790.1	22404201
AT5G06680.1	CDX73014	AT1G73790.1	22404201
AT5G06680.1	CDY11089	AT1G73790.1	22404201
AT5G06680.1	CDY60144	AT1G73790.1	22404201
AT5G06680.1	CDX68212	AT1G73790.1	22427335
AT5G06680.1	CDX73014	AT1G73790.1	22427335
AT5G06680.1	CDY11089	AT1G73790.1	22427335
AT5G06680.1	CDY60144	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009216.1-P	Field mustard	cytosol	86.27	13.69
CDX70079	Canola	cytosol	86.27	13.69
CDY14071	Canola	cytosol	73.53	12.25
AT5G06680.1	Thale cress	cytosol	75.49	9.19
CDY04999	Canola	cytosol	71.57	8.94
GSMUA_Achr10P...	Banana	cytosol	52.94	8.54
GSMUA_Achr8P22770_001	Banana	cytosol	51.96	8.43
KRG95411	Soybean	cytosol	60.78	7.36
VIT_08s0007g06730.t01	Wine grape	cytosol	60.78	7.26
KRH67085	Soybean	cytosol	59.8	7.23
HORVU5Hr1G066810.2	Barley	cytosol	50.0	7.19
TraesCS6A01G111800.1	Wheat	cytosol	51.96	6.53
PGSC0003DMT400007029	Potato	nucleus	58.82	6.42
Solyc09g009140.2.1	Tomato	nucleus	57.84	6.31
TraesCS5A01G232100.1	Wheat	cytosol	53.92	6.31
TraesCS5B01G230400.1	Wheat	cytosol	50.98	6.3
Os09t0446200-01	Rice	cytosol, nucleus	50.98	6.18
Zm00001d020664_P016	Maize	cytosol	50.98	6.11
TraesCS6D01G100700.1	Wheat	cytosol	48.04	6.03
TraesCS6B01G140000.1	Wheat	cytosol	48.04	6.0
TraesCS5D01G235900.1	Wheat	cytosol	48.04	5.94
KXG35736	Sorghum	cytosol	48.04	5.88
HORVU6Hr1G020090.2	Barley	plastid	50.0	5.69
CDY14072	Canola	cytosol	7.84	4.4
CDX73526	Canola	extracellular, vacuole	17.65	2.42
CDX78203	Canola	extracellular, vacuole	17.65	2.42
CDY16926	Canola	cytosol	11.76	2.3
CDY38427	Canola	cytosol	12.75	2.26
CDX70761	Canola	nucleus	14.71	2.21
CDX78748	Canola	nucleus	14.71	2.16
CDX82078	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDX98945	EnsemblPlantsGene:GSBRNA2T00107058001	Gene3D:1.20.120.1900	GO:A0A078EA07	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0090063	ProteinID:CDX98945	ProteinID:CDX98945.1	UniParc:UPI0004EC35DC	MapMan:35.1

Description

BnaC09g48900D

Coordinates

chrLK031907:+:752055..752432

Molecular Weight (calculated)

11696.0 Da

IEP (calculated)

9.577

GRAVY (calculated)

-0.558

Length

102 amino acids

Sequence
(BLAST)

001: MEAAKDLDDL LPAHEKYLSS IVGKSLLGEQ SQTIRKSLFV LFELILRFRS HADRLYEGIY EMQIRTKESG RGRNKTQESS SWISEGRKAI TQRAGEFLQS
101: MS

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.