Factsheet for Bra009216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003829.1-P
Bra015965.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	Bra003829.1-P	AT1G73790.1	22404201
AT5G06680.1	Bra015965.1-P	AT1G73790.1	22404201
AT5G06680.1	Bra003829.1-P	AT1G73790.1	22427335
AT5G06680.1	Bra015965.1-P	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70079	Canola	cytosol	99.69	99.69
CDX98945	Canola	cytosol	13.69	86.27
AT5G06680.1	Thale cress	cytosol	80.72	61.93
Bra028722.1-P	Field mustard	cytosol	58.16	61.21
VIT_08s0007g06730.t01	Wine grape	cytosol	67.34	50.7
KRH67085	Soybean	cytosol	63.92	48.7
GSMUA_Achr10P...	Banana	cytosol	47.43	48.26
KRG95411	Soybean	cytosol	62.52	47.74
TraesCS6A01G111800.1	Wheat	cytosol	57.54	45.57
HORVU5Hr1G066810.2	Barley	cytosol	50.23	45.56
GSMUA_Achr8P22770_001	Banana	cytosol	44.48	45.47
TraesCS6D01G100700.1	Wheat	cytosol	56.92	45.07
TraesCS5B01G230400.1	Wheat	cytosol	57.7	44.97
TraesCS6B01G140000.1	Wheat	cytosol	56.92	44.8
TraesCS5D01G235900.1	Wheat	cytosol	57.08	44.48
KXG35736	Sorghum	cytosol	57.54	44.36
Solyc09g009140.2.1	Tomato	nucleus	64.23	44.17
PGSC0003DMT400007029	Potato	nucleus	64.07	44.06
Os09t0446200-01	Rice	cytosol, nucleus	57.08	43.64
Zm00001d020664_P016	Maize	cytosol	57.23	43.24
TraesCS5A01G232100.1	Wheat	cytosol	57.7	42.55
HORVU6Hr1G020090.2	Barley	plastid	58.48	41.92
Bra013980.1-P	Field mustard	cytosol	12.29	14.6
Bra006406.1-P	Field mustard	nucleus	13.69	14.52
Bra007026.1-P	Field mustard	golgi, nucleus, plasma membrane	14.62	9.4

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.3	EnsemblPlantsGene:Bra009216	EnsemblPlants:Bra009216.1	EnsemblPlants:Bra009216.1-P	ncoils:Coil
InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856
GO:GO:0005874	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015
UniProt:M4CYB9	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI00025451C6	SEG:seg

Description

AT5G06680 (E=5e-099) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding

Coordinates

chrA10:+:15687556..15689637

Molecular Weight (calculated)

72471.0 Da

IEP (calculated)

6.179

GRAVY (calculated)

-0.167

Length

643 amino acids

Sequence
(BLAST)

001: MINQNATEEE DDDDHQEAAD LVHTLVLRLL FQNPNPPDPT SPAFLKTLRY ASRILSSRIA PSSLSPDAAS IAESLKRRLA TQGKSSSALA FADLYTKLAS
101: KTGPGSVANK RSLLHLLKTV SDDRKSSINS FDSSLLLTNL SPCNAPKKKD RTSNGALMIS KDPENLKDIA FREYKILIKE ENEVTEEVLV RDVLYACQGI
201: DGKFVTFNSE IEGYAVVDYI NTPQSMVDRL ETVGQAFCAA LQDELTDYYK LLAVLEAQAM NPIPLVSELV GGSSEYLSLR RLSVWFAEPI VKMRLMAVLV
301: DKCKVLRGGA MAGAIHLHVQ HGDPLVREFM MNLLRCVCSP LFEMVRSWVL EGELEDSFGE FFVVSHPVKV GLLWREGYKL HVEMLPSFIS PSLAQRILRT
401: GKSINFLRVC CDDHGWCDAA LQAAAASGTT TRRGGLGYGE TDALEHLVTE AALRRCQVLW NEMNHFVTNF QYYIMFEVLE VSWCNFSKEM EAARDLDDLL
501: AAHEKYLSSI VGKSLLGEQS QTIRKSLFVL FELILRFRSH ADRLYEGIYE LQIRTKESGR GRNKTQESSS WISEGRKAIT QRAGEFLQSM SQDMDSIAKE
601: YTTSLDAFLS LLPLQQTVDL KFLFFRLDFT EFYSRLHFKR KES

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.