Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78203 | Canola | extracellular, vacuole | 69.4 | 93.28 |
| CDX73526 | Canola | extracellular, vacuole | 69.1 | 92.88 |
| AT3G53760.1 | Thale cress | vacuole | 65.5 | 87.92 |
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 23.4 | 72.9 |
| VIT_07s0005g00610.t01 | Wine grape | vacuole | 53.1 | 71.47 |
| KRH31863 | Soybean | endoplasmic reticulum | 51.1 | 69.81 |
| KRH69283 | Soybean | plasma membrane | 51.0 | 69.58 |
| Solyc09g075190.2.1 | Tomato | extracellular, plasma membrane | 49.4 | 65.95 |
| GSMUA_Achr9P31020_001 | Banana | extracellular, vacuole | 48.4 | 64.19 |
| KRH16759 | Soybean | mitochondrion, nucleus | 11.0 | 63.22 |
| TraesCS1A01G095200.1 | Wheat | extracellular, vacuole | 46.8 | 62.57 |
| EES19050 | Sorghum | extracellular, vacuole | 47.0 | 62.5 |
| HORVU1Hr1G022100.2 | Barley | extracellular, vacuole | 46.7 | 62.43 |
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 46.7 | 62.43 |
| TraesCS1D01G103700.1 | Wheat | extracellular, vacuole | 46.7 | 62.43 |
| Os05t0154500-01 | Rice | extracellular, vacuole | 46.7 | 61.94 |
| Zm00001d037593_P004 | Maize | plasma membrane | 44.4 | 53.05 |
| Bra028722.1-P | Field mustard | cytosol | 12.0 | 19.64 |
| Bra006406.1-P | Field mustard | nucleus | 11.2 | 18.48 |
| Bra013980.1-P | Field mustard | cytosol | 9.1 | 16.82 |
| Bra009216.1-P | Field mustard | cytosol | 9.4 | 14.62 |
Protein Annotations
| Gene3D:1.20.120.1900 | Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | MapMan:20.1.2.1.4 | EnsemblPlantsGene:Bra007026 | EnsemblPlants:Bra007026.1 |
| EnsemblPlants:Bra007026.1-P | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004252 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005819 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0006508 |
| GO:GO:0007020 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009624 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0043015 | GO:GO:0043622 | InterPro:IPR035952 | UniProt:M4CS34 | PFAM:PF01694 |
| PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF27 | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 |
| TMHMM:TMhelix | UniParc:UPI0002542F9C | SEG:seg | : | : | : |
Description
AT3G53760 (E=0.0) | tubulin family protein
Coordinates
chrA09:-:26880509..26886687
Molecular Weight (calculated)
114255.0 Da
IEP (calculated)
8.764
GRAVY (calculated)
-0.142
Length
1000 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKDSETAP IWGKPQQREI SNIHPVNIES STPSGQHRSL NRSRGGSYAE RGRGVKEFRS WFPWLIPCFV IANVVVFVIT MYVNNCPKKS GDCFAGFLGR
101: FSFQSTRENP LLGPSSLTLR TMGGLEVKKV VKGDEGWRLL SCNWLHGGVV HLLVNMLTLL FIGMRMEREF GFIRIGLLYL ISGFGGSILS ALFLRSNISV
201: GASGAVFGLL GGMLSEIFIN WTIYSNKVVT IITLVLIVAV NLGLGVLPGV DNFAHIGGFA TGFLLGFVLL IRPHYGWINQ RNAPLGKPHK YKMYQVILWT
301: VSLLLLLGWD LIERLIKLGF YYRELDRFAN KSRNLSWIRS VTTVHPLERA DELSKQTSSS GEKKPSVYRR AIANGIVEIL SVYRSAVLHI EQQLLAETRP
401: ILATVTQGLN KFFLLFPPLY EVVLEIERDD IRGGQLLNVL NKRCHCGVPE LRACLQRLLW HGHQVMYNQL AAWMVYGILQ DPHEEFFIKR QEDGDLDHRS
501: SQEEISEKLA RTSVHETSLT DWHSGFHISL DMLPDHIPMR LGESVLFAGK AIRVLRNPSP AFQFQKDKSF QQTMRGSQRI RGFMHSDFSE KETELDADLT
601: GEELLPQSEA DKIEAMLKDL KESSEFHKRS FECTVDSVRA IAASHLWQLV VVRADLNGHL KALKDYFLLE KGDFFQCFLE ESRQLMRFPP RQSTGEADLM
701: VPFQLAATKT IGEEDKYFSR VSLRLPSFGV TVRSSQADLA RSKLALTGKA NLTSDTSVDG WDAIALEYSV DWPMQLFFTQ EVLSKYLKVF QYLIRLKRTQ
801: MELEKSWASV MHQDHMDFAQ HRKDGTKESI SQQRRQGIRP MWRVREHMAF LIRNLQFYIQ VDVIESQWKV LQTHIEDSQD FTELVGFHQE YLSALISQSF
901: LDIGAVSRIL DSIMKLCLQF CWNIENHESN PNTSELENIS EEFNQKSNSL YTILRSSKLA GSQRAPFLRR FLLRLNFNSF YEATTRGLLN VVRQRPALPL
101: FSFQSTRENP LLGPSSLTLR TMGGLEVKKV VKGDEGWRLL SCNWLHGGVV HLLVNMLTLL FIGMRMEREF GFIRIGLLYL ISGFGGSILS ALFLRSNISV
201: GASGAVFGLL GGMLSEIFIN WTIYSNKVVT IITLVLIVAV NLGLGVLPGV DNFAHIGGFA TGFLLGFVLL IRPHYGWINQ RNAPLGKPHK YKMYQVILWT
301: VSLLLLLGWD LIERLIKLGF YYRELDRFAN KSRNLSWIRS VTTVHPLERA DELSKQTSSS GEKKPSVYRR AIANGIVEIL SVYRSAVLHI EQQLLAETRP
401: ILATVTQGLN KFFLLFPPLY EVVLEIERDD IRGGQLLNVL NKRCHCGVPE LRACLQRLLW HGHQVMYNQL AAWMVYGILQ DPHEEFFIKR QEDGDLDHRS
501: SQEEISEKLA RTSVHETSLT DWHSGFHISL DMLPDHIPMR LGESVLFAGK AIRVLRNPSP AFQFQKDKSF QQTMRGSQRI RGFMHSDFSE KETELDADLT
601: GEELLPQSEA DKIEAMLKDL KESSEFHKRS FECTVDSVRA IAASHLWQLV VVRADLNGHL KALKDYFLLE KGDFFQCFLE ESRQLMRFPP RQSTGEADLM
701: VPFQLAATKT IGEEDKYFSR VSLRLPSFGV TVRSSQADLA RSKLALTGKA NLTSDTSVDG WDAIALEYSV DWPMQLFFTQ EVLSKYLKVF QYLIRLKRTQ
801: MELEKSWASV MHQDHMDFAQ HRKDGTKESI SQQRRQGIRP MWRVREHMAF LIRNLQFYIQ VDVIESQWKV LQTHIEDSQD FTELVGFHQE YLSALISQSF
901: LDIGAVSRIL DSIMKLCLQF CWNIENHESN PNTSELENIS EEFNQKSNSL YTILRSSKLA GSQRAPFLRR FLLRLNFNSF YEATTRGLLN VVRQRPALPL
001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
Arabidopsis Description
GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.