Factsheet for TraesCS1B01G123000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G022100.2	Barley	extracellular, vacuole	97.59	97.59
TraesCS1A01G095200.1	Wheat	extracellular, vacuole	95.99	95.99
TraesCS1D01G103700.1	Wheat	extracellular, vacuole	95.32	95.32
EES19050	Sorghum	extracellular, vacuole	87.17	86.7
Os05t0154500-01	Rice	extracellular, vacuole	86.63	85.94
Zm00001d037593_P004	Maize	plasma membrane	80.21	71.68
GSMUA_Achr9P31020_001	Banana	extracellular, vacuole	71.93	71.35
VIT_07s0005g00610.t01	Wine grape	vacuole	69.52	69.99
PGSC0003DMT400081381	Potato	cytosol, nucleus, plastid	29.68	69.16
KRH69283	Soybean	plasma membrane	64.84	66.17
KRH31863	Soybean	endoplasmic reticulum	64.71	66.12
CDX78203	Canola	extracellular, vacuole	65.51	65.86
AT3G53760.1	Thale cress	vacuole	65.51	65.77
CDX73526	Canola	extracellular, vacuole	65.11	65.46
Solyc09g075190.2.1	Tomato	extracellular, plasma membrane	64.3	64.22
KRH16759	Soybean	mitochondrion, nucleus	14.04	60.34
Bra007026.1-P	Field mustard	golgi, nucleus, plasma membrane	62.43	46.7
TraesCS2B01G375700.1	Wheat	nucleus	17.91	18.9
TraesCS6B01G140000.1	Wheat	cytosol	17.51	16.03
TraesCS5B01G230400.1	Wheat	cytosol	17.38	15.76

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.4	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005815
GO:GO:0005819	GO:GO:0005856	GO:GO:0007020	GO:GO:0008150	GO:GO:0009506	GO:GO:0009605
GO:GO:0009607	GO:GO:0009624	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	GO:GO:0043622
PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF27	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1B01G123000	EnsemblPlants:TraesCS1B01G123000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:148435672..148442351

Molecular Weight (calculated)

85343.3 Da

IEP (calculated)

7.750

GRAVY (calculated)

-0.266

Length

748 amino acids

Sequence
(BLAST)

001: MLHELLLALL GFTGDFVLDN SSGRRRPEPA EAGGAGDGDV GPAFRLAPDL TFLQPSERSA IERLISLGFY YRELNRFATE SRDLSWIQSS VEVSSPNADI
101: TLKGKVRKGS AYRRAIANGI AEILSVYRSA VLQVEQNLLS DPLPILATVT HGLNKFEVLL PPLYELVMEI EQKDIKGGQL LNLLHKRCHC GVPELQSCIQ
201: RLLWHGHQVM FNQLTSWMVY GILQDQYHEF FIRRQVDRDE ENEPAQSDVA DKFAQKLAKD TSLTSWHSGF HVSLDMLPDY IHMRVAESIL FAGKAIRVLR
301: NPSPGATLLE PTNQSQTLKG SHRMQGFTGG SGALKELPNF SNISAEELLP QAEADRVDAM LKQLKHASEF HKRLFESAVS SIRTIAANHL WQLVVVRADL
401: NGHLKALKDY FLLAKGDFFQ CFLEESRQLM RLPPRQSTAE ADLIVPFQLA ALKTIGDEDK YFTRVSLRMP LFGMKSSTSQ KDLQKSNTSD ISLHGKASSE
501: LALDGWHSIA LEYSVDWPLQ LFFTPDVLSK YRKVFQYLIR LKRTQMELEK SWTAVMHQDH VDFSDYCKDR KNSSATQLRR LRTKPFWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWNVLQTHV QDSHDFTELV TFHQDYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWSIE QYETGSNMFE IDHITEEFNK KSNSLYTILR
701: SSRLAGSQRA PFLRQFLMRL NFNSFFETTA RGVMNSGRLR PGTASTQL

Best Arabidopsis Sequence Match ( AT3G53760.1 )
(BLAST)

001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL

Arabidopsis Description

GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.