Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 3
- plastid 1
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 42.19 | 98.44 |
| VIT_07s0005g00610.t01 | Wine grape | vacuole | 74.5 | 75.1 |
| KRH31863 | Soybean | endoplasmic reticulum | 72.9 | 74.59 |
| KRH69283 | Soybean | plasma membrane | 72.76 | 74.35 |
| AT3G53760.1 | Thale cress | vacuole | 70.23 | 70.6 |
| CDX78203 | Canola | extracellular, vacuole | 69.83 | 70.3 |
| CDX73526 | Canola | extracellular, vacuole | 69.43 | 69.89 |
| GSMUA_Achr9P31020_001 | Banana | extracellular, vacuole | 68.36 | 67.9 |
| EES19050 | Sorghum | extracellular, vacuole | 65.55 | 65.29 |
| KRH16759 | Soybean | mitochondrion, nucleus | 15.09 | 64.94 |
| TraesCS1A01G095200.1 | Wheat | extracellular, vacuole | 64.75 | 64.84 |
| HORVU1Hr1G022100.2 | Barley | extracellular, vacuole | 64.49 | 64.57 |
| TraesCS1D01G103700.1 | Wheat | extracellular, vacuole | 64.35 | 64.44 |
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 64.22 | 64.3 |
| Os05t0154500-01 | Rice | extracellular, vacuole | 64.62 | 64.19 |
| Zm00001d037593_P004 | Maize | plasma membrane | 61.15 | 54.72 |
| Bra007026.1-P | Field mustard | golgi, nucleus, plasma membrane | 65.95 | 49.4 |
| Solyc02g081460.2.1 | Tomato | cytosol | 18.42 | 19.52 |
| Solyc09g009140.2.1 | Tomato | nucleus | 16.82 | 13.48 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.4 | InterPro:GCP | GO:GO:0000003 | GO:GO:0000226 | GO:GO:0000922 |
| GO:GO:0000923 | GO:GO:0000930 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 |
| GO:GO:0005819 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009624 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0031122 | GO:GO:0040007 | GO:GO:0043015 | GO:GO:0043622 | GO:GO:0051011 | GO:GO:0051321 |
| GO:GO:0051415 | GO:GO:0090307 | UniProt:K4CV96 | PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF27 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc09g075190.2 | EnsemblPlants:Solyc09g075190.2.1 | UniParc:UPI000276B967 | SEG:seg | : |
Description
Gamma-tubulin complex component 4 [Source:Projected from Arabidopsis thaliana (AT3G53760) UniProtKB/Swiss-Prot;Acc:Q9M350]
Coordinates
chr9:-:66960984..66971957
Molecular Weight (calculated)
86047.4 Da
IEP (calculated)
6.969
GRAVY (calculated)
-0.241
Length
749 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHELLLALL GYTGDLIIDV REQQEQSGAQ VPLSPDAPIS QEPTFKLAPD VSFVQPSERD VIERIITLGF YYRELDRFAA KSRNLSWIRS PNESPLLRTS
101: QLLKGKASKQ SLYRRAIANG IVEVLSVYRS AVLHIEQKLL SDALPIVATL TQGLNKFFVL LPPLFELILE IERDNIYGGK LLNLLHKRCH CGVPELQTCI
201: QRLLWHGHQV MYNQLASWVV YGILHDPYKE FYISSQDDKD SEQESASNLL EKVTRLSVAD TSLNDWHLGF HISLDMLPEY ITMHVVESIL FAGKAVRVLR
301: NPSPGFQFKD GSSHQQIQRA FQRTQGYTMT ISFQNNSLDK MLIGEDLLPQ AEADKIESML QDLKESSEFH KRSFENAIDT IKAVAASHLW QLVVVRADLN
401: GHLKALKDYF LLEKGDFFQS FLEESRQLMR LPPRQSTAEA DLMVPFQLAA LKTIGEEDRY FSRVSLRMPS FGVALKPSPV DQPKVKVNKD GDSVGHPDAS
501: LEVSLDGWDG ISLEYSIDWP LQLFVTPEVL SKYQRIFQYL LRLKRTQMEL EKSWAFAMHQ DHIDFAKLRS DSRKSSVPQH RRQRLRPMWH VREHMAFLIR
601: NLQFYIQVDV IESQWNVLQS HIQNSHDFTE LVGFHQEYLA ALISQSFLDI GSVSRILDGI MKLCLQFCWK IENDESNRTT SELEHIAEEF NKKSNSLYTI
701: LRSSRLAGSQ RAPFLRQFLL RLNFNSFFEA TARGVLNVVN PRPSVSVLQ
101: QLLKGKASKQ SLYRRAIANG IVEVLSVYRS AVLHIEQKLL SDALPIVATL TQGLNKFFVL LPPLFELILE IERDNIYGGK LLNLLHKRCH CGVPELQTCI
201: QRLLWHGHQV MYNQLASWVV YGILHDPYKE FYISSQDDKD SEQESASNLL EKVTRLSVAD TSLNDWHLGF HISLDMLPEY ITMHVVESIL FAGKAVRVLR
301: NPSPGFQFKD GSSHQQIQRA FQRTQGYTMT ISFQNNSLDK MLIGEDLLPQ AEADKIESML QDLKESSEFH KRSFENAIDT IKAVAASHLW QLVVVRADLN
401: GHLKALKDYF LLEKGDFFQS FLEESRQLMR LPPRQSTAEA DLMVPFQLAA LKTIGEEDRY FSRVSLRMPS FGVALKPSPV DQPKVKVNKD GDSVGHPDAS
501: LEVSLDGWDG ISLEYSIDWP LQLFVTPEVL SKYQRIFQYL LRLKRTQMEL EKSWAFAMHQ DHIDFAKLRS DSRKSSVPQH RRQRLRPMWH VREHMAFLIR
601: NLQFYIQVDV IESQWNVLQS HIQNSHDFTE LVGFHQEYLA ALISQSFLDI GSVSRILDGI MKLCLQFCWK IENDESNRTT SELEHIAEEF NKKSNSLYTI
701: LRSSRLAGSQ RAPFLRQFLL RLNFNSFFEA TARGVLNVVN PRPSVSVLQ
001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
Arabidopsis Description
GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.