Factsheet for VIT_07s0005g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081381	Potato	cytosol, nucleus, plastid	33.92	78.5
KRH31863	Soybean	endoplasmic reticulum	76.04	77.19
KRH69283	Soybean	plasma membrane	75.91	76.94
AT3G53760.1	Thale cress	vacuole	75.77	75.57
CDX78203	Canola	extracellular, vacuole	75.24	75.13
CDX73526	Canola	extracellular, vacuole	74.97	74.87
Solyc09g075190.2.1	Tomato	extracellular, plasma membrane	75.1	74.5
GSMUA_Achr9P31020_001	Banana	extracellular, vacuole	74.29	73.21
TraesCS1B01G123000.1	Wheat	extracellular, vacuole	69.99	69.52
EES19050	Sorghum	extracellular, vacuole	70.26	69.41
TraesCS1A01G095200.1	Wheat	extracellular, vacuole	69.85	69.39
HORVU1Hr1G022100.2	Barley	extracellular, vacuole	69.72	69.25
TraesCS1D01G103700.1	Wheat	extracellular, vacuole	69.45	68.98
Os05t0154500-01	Rice	extracellular, vacuole	69.99	68.97
KRH16759	Soybean	mitochondrion, nucleus	16.02	68.39
Zm00001d037593_P004	Maize	plasma membrane	65.14	57.83
Bra007026.1-P	Field mustard	golgi, nucleus, plasma membrane	71.47	53.1
VIT_14s0066g01030.t01	Wine grape	cytosol	16.82	17.81
VIT_08s0007g06730.t01	Wine grape	cytosol	17.5	15.22

Protein Annotations

Gene3D:1.20.120.1900	EntrezGene:100248708	wikigene:100248708	MapMan:20.1.2.1.4	ProteinID:CBI36872	ProteinID:CBI36872.3
ncoils:Coil	UniProt:D7U2A6	EMBL:FN596502	InterPro:GCP	GO:GO:0000003	GO:GO:0000226
GO:GO:0000922	GO:GO:0000923	GO:GO:0000930	GO:GO:0003674	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0006139	GO:GO:0006364	GO:GO:0007020
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031122
GO:GO:0032040	GO:GO:0043015	GO:GO:0051011	GO:GO:0051321	GO:GO:0051415	GO:GO:0090307
EntrezGene:LOC100248708	wikigene:LOC100248708	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF27	UniParc:UPI00015CAD2A
ArrayExpress:VIT_07s0005g00610	EnsemblPlantsGene:VIT_07s0005g00610	EnsemblPlants:VIT_07s0005g00610.t01	RefSeq:XP_002270318	RefSeq:XP_002270318.1	SEG:seg

Description

Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:D7U2A6]

Coordinates

chr7:-:3267297..3277951

Molecular Weight (calculated)

85843.2 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.255

Length

743 amino acids

Sequence
(BLAST)

001: MLHELLLALL GYTGDLIIDE REQHKSLGIN LSPDAPVSED RTFKLAPDLS FIHPSERDLI EKVITLGFYY RELDRFATKS RDLSWIRSTN VSPLSRTSEL
101: LKGKPQKSSA YGRAIANGIV EILSVYRSAV LHIEQILLSD PTPILATVIQ GLNKFFVLLP PLYELILEIE RDDICGGQLL NLLHKRCHCG VPELQACIQR
201: LLWHGHQVMY NQLASWMVYG ILQDQHGEFF IRRQEDRDVE HEASPSDMVE KLARMSTDDA SLTDWHLGFH IFLDMLPDYI HMRVAESILF AGKAIRVLRN
301: PSSAFRFQDT LNHQQIPKGS HRVQGLTGRF SFQKEPFMDM QLIGEELLPQ SEADKIEAML QELKESSEFH KRSFECAVDS IRAIAASHLW QLVVVRADLN
401: GHLKALKDYF LLAKGDFFQC FLEESRQMMR LPPRQSTAEA DLMVPFQLAA IKTIGDEDKY YSRVSLRMPS FGITVKSSQA DLPKEKTYAD GILGSSEMSL
501: EGWDGIALEY SVDWPLQLFF TQEVLSKYRR VFQYLLRLKR TQMELEKSWA SVMHQDHTDF AQHRNDHINC TVSQQRRQRS RPMWRIREHM AFLIRNLQFY
601: IQVDVIESQW NVLQAHIQES HDFTELVGFH QEYLSALISQ SFLDIGSVSR ILDSIMKLCL QFCWNIENQE SSSNTSELER ITEEFNKKSN SLYTILRSSR
701: LAGSQRAPFL RRFLLRLNFN SYFEATARGV LNVVRSRPSS LPV

Best Arabidopsis Sequence Match ( AT3G53760.1 )
(BLAST)

001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL

Arabidopsis Description

GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.