Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0040g01030.t01 | |
| VIT_10s0003g05660.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14071 | Canola | cytosol | 56.56 | 78.92 |
| Bra028722.1-P | Field mustard | cytosol | 56.32 | 78.72 |
| AT5G06680.1 | Thale cress | cytosol | 75.64 | 77.09 |
| KRH67085 | Soybean | cytosol | 74.82 | 75.71 |
| KRG95411 | Soybean | cytosol | 74.36 | 75.42 |
| GSMUA_Achr10P... | Banana | cytosol | 53.16 | 71.84 |
| CDY04999 | Canola | cytosol | 68.62 | 71.73 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 51.87 | 70.43 |
| PGSC0003DMT400007029 | Potato | nucleus | 76.0 | 69.41 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 57.26 | 68.97 |
| Solyc09g009140.2.1 | Tomato | nucleus | 75.41 | 68.88 |
| CDX70079 | Canola | cytosol | 50.7 | 67.34 |
| Bra009216.1-P | Field mustard | cytosol | 50.7 | 67.34 |
| TraesCS6D01G100700.1 | Wheat | cytosol | 62.41 | 65.64 |
| TraesCS6B01G140000.1 | Wheat | cytosol | 62.76 | 65.61 |
| TraesCS6A01G111800.1 | Wheat | cytosol | 62.3 | 65.52 |
| KXG35736 | Sorghum | cytosol | 63.82 | 65.35 |
| TraesCS5B01G230400.1 | Wheat | cytosol | 62.41 | 64.61 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 63.58 | 64.57 |
| TraesCS5D01G235900.1 | Wheat | cytosol | 62.06 | 64.24 |
| Zm00001d020664_P016 | Maize | cytosol | 63.0 | 63.22 |
| TraesCS5A01G232100.1 | Wheat | cytosol | 62.76 | 61.47 |
| CDX98945 | Canola | cytosol | 7.26 | 60.78 |
| HORVU6Hr1G020090.2 | Barley | plastid | 63.23 | 60.2 |
| VIT_14s0066g01030.t01 | Wine grape | cytosol | 18.5 | 22.51 |
| VIT_07s0005g00610.t01 | Wine grape | vacuole | 15.22 | 17.5 |
Protein Annotations
| Gene3D:1.20.120.1900 | EntrezGene:100245188 | wikigene:100245188 | MapMan:20.1.2.1.3 | ProteinID:CCB55230 | ProteinID:CCB55230.1 |
| ncoils:Coil | UniProt:F6HLH4 | EMBL:FN595991 | InterPro:GCP | GO:GO:0000003 | GO:GO:0000226 |
| GO:GO:0000922 | GO:GO:0000923 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008275 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031122 | GO:GO:0043015 | GO:GO:0051011 | GO:GO:0051321 |
| GO:GO:0051415 | GO:GO:0090307 | EntrezGene:LOC100245188 | wikigene:LOC100245188 | PFAM:PF04130 | PANTHER:PTHR19302 |
| PANTHER:PTHR19302:SF14 | UniParc:UPI0001983E73 | ArrayExpress:VIT_08s0007g06730 | EnsemblPlantsGene:VIT_08s0007g06730 | EnsemblPlants:VIT_08s0007g06730.t01 | RefSeq:XP_002275839 |
| RefSeq:XP_002275839.1 | SEG:seg | : | : | : | : |
Description
Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:F6HLH4]
Coordinates
chr8:-:20397678..20400937
Molecular Weight (calculated)
96887.8 Da
IEP (calculated)
7.722
GRAVY (calculated)
-0.193
Length
854 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEHRVTDL IKELVLRLLS QNPQNPSSSI DTQKSLRYAI RILSSLMTPS IAPDSAAIAE SIKRQLATQG KSSQALAFAD LYTKFASKNG PGSIENKWAV
101: LYLLKVISED RKNQKSRSDS RVSSGFSASV GLPALFDAES GGYSGVSRNR ETLEKGWNNG VLLVSKDPEN IREIAVREFA NLVKEENEVS EEVLVRDVLY
201: ACQGIDGKYV KFDKSVDGYL LRDSIKVPRA TRITVQKLCE LGWLFRKVKG YISESMDRFP AEDVGTVGQA FCAALQDELS HYYKLLAVLE AQSMNPIPLV
301: SETANSGTYL SLRRLSVWFA EPMVKMRLMA VLVDKCRVLR GGAMAGAIHL HAQHGDPLVH EFMRQLLCRV CSPLFEMVRS WVLEGELEDI FAEFFVLGQP
401: VKAESLWREG YRLHAGMLPS FISQSLAQRI LRTGKSINFL RVCCEDRGWA DAATEAAAAA GTTTRRGGLG YGETDALESL VIEAAKRIDK HLLDVMYKQY
501: KFKEHCLAIK RYLLLGQGDF VQYLMDIVGP ELSEPANTIS SFKLAGLLES AIRSSNAQYD DRDILDRLRV KMMPHGTGDR GWDVFSLEYD ARVPLNTVFT
601: ESVMARYLRI FNFLWKLRRV EHALIGAWKT MKPNCITSNS FIKLQSAVKL QLLSTLRRCQ VLWDEMNHFV SNLQYYIMFE VLEVSWSNFS NEMEAAKDLD
701: DLLAAHDKYL NSIVEKSLLG ERSQNLYKTL FVLFDLILRF RSHVDRLYEG IHELQSRTME SLSPSRDKTR SRRLLNDKTA EPGAWISDGR KALTQRAGEF
801: LRNMGQDLDA IAKEYSSLLE GFISQLPVQQ HIDLKFLLFR LDFTEFYCQL HPNM
101: LYLLKVISED RKNQKSRSDS RVSSGFSASV GLPALFDAES GGYSGVSRNR ETLEKGWNNG VLLVSKDPEN IREIAVREFA NLVKEENEVS EEVLVRDVLY
201: ACQGIDGKYV KFDKSVDGYL LRDSIKVPRA TRITVQKLCE LGWLFRKVKG YISESMDRFP AEDVGTVGQA FCAALQDELS HYYKLLAVLE AQSMNPIPLV
301: SETANSGTYL SLRRLSVWFA EPMVKMRLMA VLVDKCRVLR GGAMAGAIHL HAQHGDPLVH EFMRQLLCRV CSPLFEMVRS WVLEGELEDI FAEFFVLGQP
401: VKAESLWREG YRLHAGMLPS FISQSLAQRI LRTGKSINFL RVCCEDRGWA DAATEAAAAA GTTTRRGGLG YGETDALESL VIEAAKRIDK HLLDVMYKQY
501: KFKEHCLAIK RYLLLGQGDF VQYLMDIVGP ELSEPANTIS SFKLAGLLES AIRSSNAQYD DRDILDRLRV KMMPHGTGDR GWDVFSLEYD ARVPLNTVFT
601: ESVMARYLRI FNFLWKLRRV EHALIGAWKT MKPNCITSNS FIKLQSAVKL QLLSTLRRCQ VLWDEMNHFV SNLQYYIMFE VLEVSWSNFS NEMEAAKDLD
701: DLLAAHDKYL NSIVEKSLLG ERSQNLYKTL FVLFDLILRF RSHVDRLYEG IHELQSRTME SLSPSRDKTR SRRLLNDKTA EPGAWISDGR KALTQRAGEF
801: LRNMGQDLDA IAKEYSSLLE GFISQLPVQQ HIDLKFLLFR LDFTEFYCQL HPNM
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.