Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G230400.1 | Wheat | cytosol | 91.17 | 96.36 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 78.1 | 96.05 |
| TraesCS5D01G235900.1 | Wheat | cytosol | 90.71 | 95.88 |
| TraesCS6A01G111800.1 | Wheat | cytosol | 86.93 | 93.35 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 86.01 | 89.18 |
| KXG35736 | Sorghum | cytosol | 84.52 | 88.37 |
| Zm00001d020664_P016 | Maize | cytosol | 82.0 | 84.02 |
| GSMUA_Achr10P... | Banana | cytosol | 56.54 | 78.01 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 54.24 | 75.2 |
| CDY14071 | Canola | cytosol | 48.85 | 69.61 |
| Bra028722.1-P | Field mustard | cytosol | 48.74 | 69.56 |
| AT5G06680.1 | Thale cress | cytosol | 61.35 | 63.84 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 61.47 | 62.76 |
| CDY04999 | Canola | cytosol | 57.8 | 61.69 |
| KRG95411 | Soybean | cytosol | 57.8 | 59.86 |
| KRH67085 | Soybean | cytosol | 57.8 | 59.72 |
| CDX70079 | Canola | cytosol | 42.55 | 57.7 |
| Bra009216.1-P | Field mustard | cytosol | 42.55 | 57.7 |
| Solyc09g009140.2.1 | Tomato | nucleus | 58.83 | 54.87 |
| PGSC0003DMT400007029 | Potato | nucleus | 58.72 | 54.76 |
| CDX98945 | Canola | cytosol | 6.31 | 53.92 |
| TraesCS2A01G356400.1 | Wheat | cytosol | 16.51 | 20.31 |
| TraesCS1A01G095200.1 | Wheat | extracellular, vacuole | 15.02 | 17.51 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.3 | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005815 |
| GO:GO:0005856 | GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 |
| PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF14 | EnsemblPlantsGene:TraesCS5A01G232100 | EnsemblPlants:TraesCS5A01G232100.1 | SEG:seg |
Description
No Description!
Coordinates
chr5A:+:447535033..447537748
Molecular Weight (calculated)
97329.2 Da
IEP (calculated)
7.772
GRAVY (calculated)
-0.173
Length
872 amino acids
Sequence
(BLAST)
(BLAST)
001: MMELAVTQIQ TPKKYKTKQR DRETTHPGKF PNLHPTQPSG SNPSAPMDDH QAQDLIKELV LRLAPAESGG GGRDAGGALR FAHRLLSSRL APAVLPDEHA
101: VAEAIKRRLA ASGRPDDALA FADLHSKLSA RSRPASLWPL LYLLDSLSSH RRGAAAASSC LPNLPTAAPP AAGGKQASRA PGTPAGGVVL VSKDPDNIRE
201: IALREYTELV LDETEVSEAA LVRDVLYACQ GIDGRYVRYD KGSDAYDLPD GVRVPRSTRT LVRKLCEVGW LFRKVRGFIS DNVSRLPSHA ATEVGTVAQA
301: FCSALQEELS DYYKLLAVLE SYSLNPIPTP GSDSGVSGNY LSLRRLVVWL AGPTVRMRLM AVLVDGCRGL RGGGMAGAIH GHAQHGDPMV QDFMGRLLRR
401: VCSPLFEMVR SWVLEGELED VFGEFFILGQ PVKAESLWRE GYLIQSDMLP SFISPVLAQR ILRTGKSINF LRVCCDDNGW AEAATEAAAY VGTTTSRGGL
501: GYGQIDALES LVVEAAKRID QRLMDVIHKR YRFKDHCLAI KRYLLLGQGD FVQYLMDVVG PELSEPANRI SPFHFAGLLE TAIRASDTQY DDRDILDRIK
601: VKMMDHGDGD VGWDVFSLEY DARVPLDTVF TASVMKMYLK IFNFLWKLKR VDHSLTGVWK TMKPNCILSS PFYKEGASIR AQFVSVLRKC QVLFNEMNHF
701: VTNFQYYIMF EVLEVSWARF SEEMDAAKDL DDLLLGHDKY LTSIVEKSLL GERSLGILRN LFALFDIILQ FRSHADRWFE RIYELQLRGK GKSKTKTKET
801: GSWLEGGRKA MIQLAGELFL KMGEDLDSIA KDYTASLDSF ISQLPLQQHV DLKFLLFRLD FTEYYSRVSS NK
101: VAEAIKRRLA ASGRPDDALA FADLHSKLSA RSRPASLWPL LYLLDSLSSH RRGAAAASSC LPNLPTAAPP AAGGKQASRA PGTPAGGVVL VSKDPDNIRE
201: IALREYTELV LDETEVSEAA LVRDVLYACQ GIDGRYVRYD KGSDAYDLPD GVRVPRSTRT LVRKLCEVGW LFRKVRGFIS DNVSRLPSHA ATEVGTVAQA
301: FCSALQEELS DYYKLLAVLE SYSLNPIPTP GSDSGVSGNY LSLRRLVVWL AGPTVRMRLM AVLVDGCRGL RGGGMAGAIH GHAQHGDPMV QDFMGRLLRR
401: VCSPLFEMVR SWVLEGELED VFGEFFILGQ PVKAESLWRE GYLIQSDMLP SFISPVLAQR ILRTGKSINF LRVCCDDNGW AEAATEAAAY VGTTTSRGGL
501: GYGQIDALES LVVEAAKRID QRLMDVIHKR YRFKDHCLAI KRYLLLGQGD FVQYLMDVVG PELSEPANRI SPFHFAGLLE TAIRASDTQY DDRDILDRIK
601: VKMMDHGDGD VGWDVFSLEY DARVPLDTVF TASVMKMYLK IFNFLWKLKR VDHSLTGVWK TMKPNCILSS PFYKEGASIR AQFVSVLRKC QVLFNEMNHF
701: VTNFQYYIMF EVLEVSWARF SEEMDAAKDL DDLLLGHDKY LTSIVEKSLL GERSLGILRN LFALFDIILQ FRSHADRWFE RIYELQLRGK GKSKTKTKET
801: GSWLEGGRKA MIQLAGELFL KMGEDLDSIA KDYTASLDSF ISQLPLQQHV DLKFLLFRLD FTEYYSRVSS NK
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.