Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G235900.1 | Wheat | cytosol | 98.18 | 98.18 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 82.67 | 96.19 |
| TraesCS6B01G140000.1 | Wheat | cytosol | 93.33 | 94.25 |
| TraesCS5A01G232100.1 | Wheat | cytosol | 96.36 | 91.17 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 92.48 | 90.73 |
| KXG35736 | Sorghum | cytosol | 90.55 | 89.57 |
| Zm00001d020664_P016 | Maize | cytosol | 87.15 | 84.49 |
| GSMUA_Achr10P... | Banana | cytosol | 59.76 | 78.01 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 57.33 | 75.2 |
| CDY14071 | Canola | cytosol | 51.76 | 69.77 |
| Bra028722.1-P | Field mustard | cytosol | 51.64 | 69.72 |
| AT5G06680.1 | Thale cress | cytosol | 64.85 | 63.84 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 64.61 | 62.41 |
| CDY04999 | Canola | cytosol | 61.33 | 61.93 |
| KRH67085 | Soybean | cytosol | 61.7 | 60.31 |
| KRG95411 | Soybean | cytosol | 61.21 | 59.98 |
| CDX70079 | Canola | cytosol | 44.97 | 57.7 |
| Bra009216.1-P | Field mustard | cytosol | 44.97 | 57.7 |
| Solyc09g009140.2.1 | Tomato | nucleus | 62.06 | 54.76 |
| PGSC0003DMT400007029 | Potato | nucleus | 61.94 | 54.65 |
| CDX98945 | Canola | cytosol | 6.3 | 50.98 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 17.58 | 20.45 |
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 15.76 | 17.38 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.3 | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005815 |
| GO:GO:0005856 | GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 |
| PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF14 | EnsemblPlantsGene:TraesCS5B01G230400 | EnsemblPlants:TraesCS5B01G230400.1 | SEG:seg |
Description
No Description!
Coordinates
chr5B:+:407215291..407218083
Molecular Weight (calculated)
92145.2 Da
IEP (calculated)
7.005
GRAVY (calculated)
-0.102
Length
825 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHQAQDLV KELVLRLAPA ESGGGGRDAG GALRFAHRLL SSRLAPAVLP DEHAVAEAIK RRLAASGRPD DALAFADLHS KLSARSRPAS LWPLLYLLDS
101: LSSHRRGAAA SSCLPNLPAA APAAAGGKQP SRVPGTPAGG VVLISKDPDN IREIALREYT ELVLDETEVS EAALVRDVLY ACQGIDGRYV RYDKGSDAYD
201: LPEGVRVPRS TRTLVRKLCE VGWLFRKVRG FISDNVSRLP SHAATEVGTV AQAFCSALQE ELSDYYKLLA VLESYSLNPI PTPGSDSGVS GNYLSLRRLV
301: VWLAEPTVRM RLMAVLVDGC RGLRGGGMAG AIHGHAQHGD PMVQDFMGRL LRRVCSPLFE MVRSWVLEGE LEDVFGEFFI VGQPVKAESL WREGYLIQSD
401: MLPSFISPVL AQRILRTGKS INFLRVCCDD NGWAEAATEA AAYVGTTTSR GGLGYGQIDA LEALVVEAAK RIDQRLMDVI HKRYRFKDHC LAIKRYLLLG
501: QGDFVQYLMD VVGPELSEPA NRISPFHLAG LLETAIRASD AQYDDRDILD RIKVKMMDHG DGDVGWDVFS LEYDARVPLD TVFTASVMKM YLKIFNFLWK
601: LKRVDHSLTG VWKTMKPNCI ISSPFYKEGT GIRAQFVSVL RKCQVLFNEM NHFVTNFQYY IMFEVLEVSW ARFSEEMDAA KDLDDLLMGH DKYLTSIVEK
701: SLLGERSLGI LRNLFALFDI ILQFRSHADR WFERIYELQL RGKGKPKTKT KETGSWLEGG RKAMIQLAGE LFLKMGEDLD SIAKDYTASL DSFISQLPLQ
801: QHVDLKFLLF RLDFTEYYSR VLSNK
101: LSSHRRGAAA SSCLPNLPAA APAAAGGKQP SRVPGTPAGG VVLISKDPDN IREIALREYT ELVLDETEVS EAALVRDVLY ACQGIDGRYV RYDKGSDAYD
201: LPEGVRVPRS TRTLVRKLCE VGWLFRKVRG FISDNVSRLP SHAATEVGTV AQAFCSALQE ELSDYYKLLA VLESYSLNPI PTPGSDSGVS GNYLSLRRLV
301: VWLAEPTVRM RLMAVLVDGC RGLRGGGMAG AIHGHAQHGD PMVQDFMGRL LRRVCSPLFE MVRSWVLEGE LEDVFGEFFI VGQPVKAESL WREGYLIQSD
401: MLPSFISPVL AQRILRTGKS INFLRVCCDD NGWAEAATEA AAYVGTTTSR GGLGYGQIDA LEALVVEAAK RIDQRLMDVI HKRYRFKDHC LAIKRYLLLG
501: QGDFVQYLMD VVGPELSEPA NRISPFHLAG LLETAIRASD AQYDDRDILD RIKVKMMDHG DGDVGWDVFS LEYDARVPLD TVFTASVMKM YLKIFNFLWK
601: LKRVDHSLTG VWKTMKPNCI ISSPFYKEGT GIRAQFVSVL RKCQVLFNEM NHFVTNFQYY IMFEVLEVSW ARFSEEMDAA KDLDDLLMGH DKYLTSIVEK
701: SLLGERSLGI LRNLFALFDI ILQFRSHADR WFERIYELQL RGKGKPKTKT KETGSWLEGG RKAMIQLAGE LFLKMGEDLD SIAKDYTASL DSFISQLPLQ
801: QHVDLKFLLF RLDFTEYYSR VLSNK
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.