Factsheet for Zm00001d020664_P016

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012933_P001
Zm00001d034680_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06680.1	Zm00001d012933_P001	AT1G73790.1	22404201
AT5G06680.1	Zm00001d034680_P001	AT1G73790.1	22404201
AT5G06680.1	Zm00001d012933_P001	AT1G73790.1	22427335
AT5G06680.1	Zm00001d034680_P001	AT1G73790.1	22427335

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35736	Sorghum	cytosol	93.65	95.56
HORVU5Hr1G066810.2	Barley	cytosol	73.56	88.29
Os09t0446200-01	Rice	cytosol, nucleus	86.84	87.87
TraesCS5B01G230400.1	Wheat	cytosol	84.49	87.15
TraesCS5D01G235900.1	Wheat	cytosol	84.25	86.91
TraesCS6A01G111800.1	Wheat	cytosol	82.84	86.82
TraesCS6B01G140000.1	Wheat	cytosol	82.61	86.05
TraesCS6D01G100700.1	Wheat	cytosol	82.02	85.96
TraesCS5A01G232100.1	Wheat	cytosol	84.02	82.0
HORVU6Hr1G020090.2	Barley	plastid	83.67	79.38
GSMUA_Achr10P...	Banana	cytosol	58.4	78.64
GSMUA_Achr8P22770_001	Banana	cytosol	55.46	75.04
CDY14071	Canola	cytosol	50.41	70.1
Bra028722.1-P	Field mustard	cytosol	50.29	70.05
AT5G06680.1	Thale cress	cytosol	63.1	64.08
VIT_08s0007g06730.t01	Wine grape	cytosol	63.22	63.0
CDY04999	Canola	cytosol	59.69	62.18
KRG95411	Soybean	cytosol	60.99	61.64
KRH67085	Soybean	cytosol	61.1	61.61
Bra009216.1-P	Field mustard	cytosol	43.24	57.23
CDX70079	Canola	cytosol	43.24	57.23
Solyc09g009140.2.1	Tomato	nucleus	61.46	55.94
PGSC0003DMT400007029	Potato	nucleus	61.34	55.83
CDX98945	Canola	cytosol	6.11	50.98
Zm00001d025793_P001	Maize	cytosol	17.04	20.28
Zm00001d037593_P004	Maize	plasma membrane	15.39	15.65

Protein Annotations

EntrezGene:100280166	MapMan:20.1.2.1.3	UniProt:A0A1D6I5G9	ncoils:Coil	InterPro:GCP	GO:GO:0000226
GO:GO:0000922	GO:GO:0000930	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0005815
GO:GO:0005819	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886	GO:GO:0005938	GO:GO:0007020
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009624	GO:GO:0009898	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0043015	GO:GO:0055028	GO:GO:0090063	ProteinID:ONM55349.1
PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI00084383CF	EnsemblPlantsGene:Zm00001d020664	EnsemblPlants:Zm00001d020664_P016
EnsemblPlants:Zm00001d020664_T016	SEG:seg	:	:	:	:

Description

Gamma-tubulin complex component 3

Coordinates

chr7:+:127264034..127271063

Molecular Weight (calculated)

95355.8 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.102

Length

851 amino acids

Sequence
(BLAST)

001: MTDQQTQDLV KELVHRLLSA AESGGRGGGR DTGGALRFAH RILSSRLAPA VLPDEHALAE SIKRRLAASG RPDDALSFAD LHSKLSVRAR PASLWPLLYL
101: LDSLSSQYRA AAAASCLPNL PIAALPQNAT SGTAPGAGVR PGSRTHGAPP GGLVLVSKDP DNIREIALRE YTELVIDETE VSEAALVRDV LYACQGIDGR
201: YVRYDKSVDS YDLPDGVRVP RSTRTLVRKL CELGWLFSKV RGFISDNISR SPSDAATEVG TVTQAFCSAL QEELSDYYKL LAVLESYSLN PIPTPGSDSG
301: VSSNYLSLRR LAVWLAEPAV RMRLMAVLVD GCRGLRGGAM AGVIHGHAQH GDPMFQEFMG RLLRRVCSPL FEMVRSWVLE GELEDVFAEF FIVGQPVKAE
401: SLWREGYLIQ SDMLPAFISP VLAKRILRTG KSINFLRVCC DDSGWADAAA EAAAYVGTTT SRGGLGYGET DALEALVVEA AKRIDRHLMD VIHKRYRFKD
501: HCLAIKRYLL LGQGDFVQYL MDVVGPELSE PANRISSFQL AGLLETAIRA SNAQYDDCDI LDRIKVKMMD HGDGDRGWDV FSLEYDARVP LDTVFTASVM
601: KMYLKVFNFL WKLKRVDHSL TGVWKTMKPN CIVSSPFYKE GTSIRAQFVS VLRKCQVLFN EMNHFVTNFQ YYIMFEVLEV SWARFSDEMD AAKDLDDLLL
701: AHDKYLNSIL EKALLGEHSQ GLLRNLFELF DIILQFRSHA DRWFERIYEL QLRGKGKSKS KDTGSWFDGG RKAMIQLAGE LFWKMGEDLD SIAKDYTASL
801: DAFITQLPMQ QHVDLKFLLF RLDFTEYYRL MLMCRFNEAK ATHFMQLCTQ L

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.