Factsheet for GSMUA_Achr10P05510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P22770_001	Banana	cytosol	79.11	79.49
HORVU5Hr1G066810.2	Barley	cytosol	77.53	69.11
Bra028722.1-P	Field mustard	cytosol	63.77	65.96
CDY14071	Canola	cytosol	63.77	65.85
TraesCS6A01G111800.1	Wheat	cytosol	78.01	60.71
KXG35736	Sorghum	cytosol	78.96	59.83
TraesCS5B01G230400.1	Wheat	cytosol	78.01	59.76
TraesCS6D01G100700.1	Wheat	cytosol	76.74	59.73
TraesCS6B01G140000.1	Wheat	cytosol	76.74	59.36
TraesCS5D01G235900.1	Wheat	cytosol	77.22	59.15
Os09t0446200-01	Rice	cytosol, nucleus	78.48	58.98
Zm00001d020664_P016	Maize	cytosol	78.64	58.4
TraesCS5A01G232100.1	Wheat	cytosol	78.01	56.54
HORVU6Hr1G020090.2	Barley	plastid	77.06	54.29
AT5G06680.1	Thale cress	cytosol	70.57	53.22
VIT_08s0007g06730.t01	Wine grape	cytosol	71.84	53.16
CDX98945	Canola	cytosol	8.54	52.94
CDY04999	Canola	cytosol	67.72	52.39
KRG95411	Soybean	cytosol	68.2	51.19
KRH67085	Soybean	cytosol	68.2	51.07
CDX70079	Canola	cytosol	48.42	47.59
Bra009216.1-P	Field mustard	cytosol	48.26	47.43
Solyc09g009140.2.1	Tomato	nucleus	65.35	44.17
PGSC0003DMT400007029	Potato	nucleus	65.19	44.06
GSMUA_Achr5P24280_001	Banana	cytosol	19.62	17.51
GSMUA_Achr9P31020_001	Banana	extracellular, vacuole	19.3	16.18

Protein Annotations

MapMan:20.1.2.1.3	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815
GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0043015	EnsemblPlantsGene:GSMUA_Achr10G05510_001	EnsemblPlants:GSMUA_Achr10P05510_001	EnsemblPlants:GSMUA_Achr10T05510_001	UniProt:M0RFM8	PFAM:PF04130
PANTHER:PTHR19302	PANTHER:PTHR19302:SF14	UniParc:UPI0002965331	SEG:seg	:	:

Description

Putative Gamma-tubulin complex component 3 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G05510_001]

Coordinates

chr10:-:15263960..15266552

Molecular Weight (calculated)

72120.7 Da

IEP (calculated)

6.470

GRAVY (calculated)

-0.038

Length

632 amino acids

Sequence
(BLAST)

001: MDHPKTLDLV KELVLRLLSA DPDNIREIAL REYGDIVMDE TEVSESALVR DILFVSQGID GRYVRFDKLS DYYKLLAVLE SHSLNPIPTP GSVSGVTVNY
101: LSLRRLAVWL AEPMVRMRLM AVLVDGCRSL RGGAMAGAIH ERAQHGDPLV QEFMGCLLRR VCSPLFEMVR SWVLEGELED TFAEFFIQGQ AVKAESLWRE
201: GYQIQSAMLP SFISPALAQR ILRTGKSINF LRACCEDNGW ATAAAEAAAH VGTTTRRGGL VYGEPNALEA LVVEAAKRID RHLMDVIHKR YRFKDHCLAI
301: KRYLLLGQGD FVQYLMDIIG PELSEPANTI SSFHLSGLLE MAIRASNAQY DDWDILDHLK VKMMEHGDGN RGWDVFSLEY DATVPLDTVF TASVMKKYLK
401: IFNFLWKLKR VEHALIGIWK MMKPNSIISC IYTEEGAAVK AQFVAVLRRC QVLWNEMNHF VTNFQYYIMF EVLEVSWAHF SEEMDAAKDL DDLLAAHDKY
501: LNSIVEKSLL GEQSQGLIRI LFVLFDLILR LRTHAERWFE SIFQLQLRGK SKLKTKLKEP GSYPDVGRKA IMQLAGEFLQ RMGEDLDKIA KEYSASLDAF
601: ISQLPMQQHV DLKFLLFRLD FTEFYSRLSP SK

Best Arabidopsis Sequence Match ( AT5G06680.1 )
(BLAST)

001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG

Arabidopsis Description

GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.