Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78203 | Canola | extracellular, vacuole | 92.48 | 92.61 |
| CDX73526 | Canola | extracellular, vacuole | 92.08 | 92.2 |
| VIT_07s0005g00610.t01 | Wine grape | vacuole | 75.57 | 75.77 |
| PGSC0003DMT400081381 | Potato | cytosol, nucleus, plastid | 31.81 | 73.83 |
| KRH31863 | Soybean | endoplasmic reticulum | 72.35 | 73.63 |
| KRH69283 | Soybean | plasma membrane | 72.35 | 73.53 |
| Solyc09g075190.2.1 | Tomato | extracellular, plasma membrane | 70.6 | 70.23 |
| GSMUA_Achr9P31020_001 | Banana | extracellular, vacuole | 68.86 | 68.04 |
| EES19050 | Sorghum | extracellular, vacuole | 66.31 | 65.69 |
| TraesCS1A01G095200.1 | Wheat | extracellular, vacuole | 65.91 | 65.64 |
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 65.77 | 65.51 |
| Bra007026.1-P | Field mustard | golgi, nucleus, plasma membrane | 87.92 | 65.5 |
| TraesCS1D01G103700.1 | Wheat | extracellular, vacuole | 65.64 | 65.37 |
| HORVU1Hr1G022100.2 | Barley | extracellular, vacuole | 65.64 | 65.37 |
| KRH16759 | Soybean | mitochondrion, nucleus | 15.17 | 64.94 |
| Os05t0154500-01 | Rice | extracellular, vacuole | 65.37 | 64.59 |
| Zm00001d037593_P004 | Maize | plasma membrane | 62.28 | 55.44 |
| AT5G17410.2 | Thale cress | nucleus, plastid | 17.58 | 19.29 |
| AT5G06680.1 | Thale cress | cytosol | 17.85 | 15.87 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.4 | EntrezGene:824543 | UniProt:A0A178V4Y7 | ProteinID:AEE79139.1 | ArrayExpress:AT3G53760 |
| EnsemblPlantsGene:AT3G53760 | RefSeq:AT3G53760 | TAIR:AT3G53760 | RefSeq:AT3G53760-TAIR-G | EnsemblPlants:AT3G53760.1 | TAIR:AT3G53760.1 |
| Unigene:At.35162 | EMBL:BT012227 | EMBL:BT012412 | ProteinID:CAB88338.1 | InterPro:GCP | Symbol:GCP4 |
| GO:GO:0000003 | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0000923 | GO:GO:0000930 | GO:GO:0003674 |
| GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005819 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0007020 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009624 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0040007 | GO:GO:0043015 | GO:GO:0043622 |
| GO:GO:0051011 | GO:GO:0051321 | GO:GO:0051415 | GO:GO:0090307 | RefSeq:NP_190944.2 | ProteinID:OAP01290.1 |
| PFAM:PF04130 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF27 | UniProt:Q9M350 |
| SignalP:SignalP-noTM | UniParc:UPI000034EFF9 | SEG:seg | : | : | : |
Description
GCP4Gamma-tubulin complex component 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M350]
Coordinates
chr3:-:19917820..19922512
Molecular Weight (calculated)
85912.1 Da
IEP (calculated)
6.889
GRAVY (calculated)
-0.329
Length
745 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHELLLALL GFTGDLIVDE REQRKTLGLA FNSDSPLSDE CTFKLAPDIS FIEPSERDLI ERLIKLGFYY RELDRFAKKS RNLSWIRSVT SVHPLERADE
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
101: LSKQSREKKP SVYRRAIANG IGEILSVYRS AVLHIEQKLL AETTPILATV TEGLNKFFVL FPPLYEVILE IERDDIRGGQ LLNVLNKRCH CGVPELRTCL
201: QRLLWNGHQV MYNQLAAWMV YGILQDPHGE FFIKRQDDGD LDHRSSQEEV SEKLARTSVH ETSLTDWHSG FHISLDMLPD YIPMRLGESI LFAGKAIRVL
301: RNPSPAFQFQ KDKSFQQTMR GSQRIRGFMH SDFPETETEL DADLTGGELL PQSEADKIEA MLKDLKESSE FHKRSFECTV DSVRAIAASH LWQLVVVRAD
401: LNGHLKALKD YFLLEKGDFF QCFLEESRQL MRLPPRQSTG ESDLMVPFQL AATKTIAEED KYFSRVSLRM PSFGVTVRSS QADMVRSKVS LTGKANLTSD
501: TSVDGWDAIA LEYSVDWPMQ LFFTQEVLSK YLKVFQYLIR LKRTQMELEK SWASVMHQDH IESAQHRKDG LNGSTSQQRR QGIRPMWRVR EHMAFLIRNL
601: QFYIQVDVIE SQWKVLQTHI HDSQDFTELV GFHQEYLSAL ISQSFLDIGS VSRILDSIMK LCLQFCWNIE NQESNPNTSE LENIAEEFNK KSNSLYTILR
701: SSKLAGSQRA PFLRRFLLRL NFNSFYEATA RGVLNVVRQR PALPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.