Factsheet for Solyc02g081460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050760	Potato	cytosol	98.59	98.59
VIT_14s0066g01030.t01	Wine grape	cytosol	74.12	74.64
KRG89853	Soybean	cytosol, extracellular, nucleus	17.4	72.35
KRH07351	Soybean	cytosol	67.33	71.69
KRH66204	Soybean	cytosol, nucleus, peroxisome	67.19	71.54
CDX82078	Canola	mitochondrion	12.02	71.43
KRG89851	Soybean	cytosol	46.39	71.0
AT5G17410.2	Thale cress	nucleus, plastid	67.04	69.81
CDY16926	Canola	cytosol	50.21	68.01
CDX70761	Canola	nucleus	65.21	67.99
Bra006406.1-P	Field mustard	nucleus	58.27	67.99
CDX78748	Canola	nucleus	66.48	67.82
GSMUA_Achr5P24280_001	Banana	cytosol	66.48	66.38
Os04t0501700-01	Rice	nucleus	66.62	66.24
TraesCS2B01G375700.1	Wheat	nucleus	66.2	66.01
TraesCS2A01G356400.1	Wheat	cytosol	66.05	65.87
TraesCS2D01G355300.1	Wheat	cytosol	66.05	65.87
OQU81893	Sorghum	cytosol	65.77	65.59
Zm00001d025793_P001	Maize	cytosol	65.91	65.17
CDY38427	Canola	cytosol	52.05	64.11
HORVU2Hr1G086820.13	Barley	cytosol, plastid	65.77	62.33
Bra013980.1-P	Field mustard	cytosol	42.01	54.9
Solyc09g075190.2.1	Tomato	extracellular, plasma membrane	19.52	18.42
Solyc09g009140.2.1	Tomato	nucleus	19.94	15.08

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.2	ncoils:Coil	InterPro:GCP	GO:GO:0000003	GO:GO:0000226
GO:GO:0000922	GO:GO:0000923	GO:GO:0003674	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815
GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0007049	GO:GO:0008150	GO:GO:0008275
GO:GO:0009987	GO:GO:0016043	GO:GO:0031122	GO:GO:0043015	GO:GO:0051011	GO:GO:0051321
GO:GO:0051415	GO:GO:0090307	UniProt:K4BA16	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF13
EnsemblPlantsGene:Solyc02g081460.2	EnsemblPlants:Solyc02g081460.2.1	UniParc:UPI000276778E	SEG:seg	:	:

Description

Gamma-tubulin complex component 2 [Source:Projected from Arabidopsis thaliana (AT5G17410) UniProtKB/Swiss-Prot;Acc:Q9C5H9]

Coordinates

chr2:-:45416493..45425021

Molecular Weight (calculated)

79826.5 Da

IEP (calculated)

6.688

GRAVY (calculated)

-0.098

Length

707 amino acids

Sequence
(BLAST)

001: MDSAAAISLC PSTPGWNLDR PFLTGQFYQE TKISSGTSEY KGFSAESSSG ADKAIGCYHA TIQELIVIDD LLSTLIGIEG RYISIKKVRG KEDDITFQVD
101: ASMDLALQEF AKRLFPLCES YILINQFVET RSQFKTGLVN HAFAAALRAL LLDYQAMVAQ LEHQFRLGKL SIQGLWFYCQ PMMGSMQALS MVVKKAAADN
201: CVGSAVLNLL QSQAKAMAGD HVVRSLLEKM SQSASTAYLG ILERWVYEGV IDDPYGEFFI AENKSLQKES LTQDYDAKYW QQRYSLKDEI PSFLANAAET
301: ILITGKYLNV MRECGHSIQI PVAEKSKLTS AGSNHHYLEC IKSAYDFASG ELLNLVKNKY DLMGKLQSIK HYLLLDQGDF LVHFMDTARE ELMKKPDEIS
401: VEKLQSLLDL ALRSTAAGAD PCHEDLLCCV ERTTLLKRLS TLKDLEISRS APDSNDLEEP LSITGLETFS LNYKVRWPLS LVISRKALTK YQLIFRFLFH
501: CKHVDRQLSG AWQVHQGLRK LDMQGTTVSV SSLLCRNMLK FINSLLHYLT FEVLEPNWHV MLNRLQTAKS IDEVIQYHDF FLDKCLRECV LLSPALLKKV
601: ERLKLICLQY AAAMQRLITS SLDTTDNDTL SNDSPSIEKY KNLKLRTPYQ MLRLAPENVT VLDSVLKFEK EFSFELHSLG PILSSGSRAE PYLTHLAQWI
701: LGVGKDQ

Best Arabidopsis Sequence Match ( AT5G17410.2 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.