CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025793_P001	Maize	cytosol	96.47	95.66
Os04t0501700-01	Rice	nucleus	90.55	90.3
TraesCS2A01G356400.1	Wheat	cytosol	89.99	89.99
TraesCS2D01G355300.1	Wheat	cytosol	89.7	89.7
TraesCS2B01G375700.1	Wheat	nucleus	89.42	89.42
HORVU2Hr1G086820.13	Barley	cytosol, plastid	89.42	84.99
GSMUA_Achr5P24280_001	Banana	cytosol	74.19	74.29
CDX82078	Canola	mitochondrion	12.13	72.27
VIT_14s0066g01030.t01	Wine grape	cytosol	68.69	69.37
AT5G17410.2	Thale cress	nucleus, plastid	65.44	68.34
KRG89853	Soybean	cytosol, extracellular, nucleus	16.22	67.65
CDX78748	Canola	nucleus	65.44	66.96
CDX70761	Canola	nucleus	63.89	66.81
Bra006406.1-P	Field mustard	nucleus	56.98	66.67
CDY16926	Canola	cytosol	48.94	66.48
KRH07351	Soybean	cytosol	62.2	66.42
KRG89851	Soybean	cytosol	43.02	66.02
KRH66204	Soybean	cytosol, nucleus, peroxisome	61.78	65.96
PGSC0003DMT400050760	Potato	cytosol	65.73	65.91
Solyc02g081460.2.1	Tomato	cytosol	65.59	65.77
CDY38427	Canola	cytosol	49.79	61.5
Bra013980.1-P	Field mustard	cytosol	39.92	52.31
EES19050	Sorghum	extracellular, vacuole	18.34	17.29
KXG35736	Sorghum	cytosol	20.03	17.03

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.2	UniProt:A0A1Z5RDR1	InterPro:GCP	GO:GO:0000226	GO:GO:0000922
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005815	GO:GO:0005856	GO:GO:0005874	GO:GO:0007020	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	EnsemblPlants:OQU81893	ProteinID:OQU81893	ProteinID:OQU81893.1
PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF13	EnsemblPlantsGene:SORBI_3006G137700	UniParc:UPI000B8BA969	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:50004994..50011611

Molecular Weight (calculated)

79657.4 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.076

Length

709 amino acids

Sequence
(BLAST)

001: MDPAPATPRW NLERPYLTGR FHQEAKAAAA AQGPGSKSFS LESFSRGAGA GTGSVIGSYA VSVQELLVID DLLSALVGIE GRYISIKRVR GKEGYVVFQI
101: DSSMDLALQE LTRRIFPLCE DYVLVSQFVE SRSHFKNGLV NHALAAALRA FLLDYQAMVA QLEHQFRLGR LSVQGLWFFC QRMMSSLNAL AVLVEKATSN
201: NTNGSATLNL LQSQAKAMGG DSAVRSLLEK MTEYASGAYL RMLERWVYEG LIDDPYGEFF IAENKSLQKE SLTQDYDAKY WQQRYSLKEG IPSFLTNVAA
301: MILTTGKYLN VMRECGHNVQ VSLSDNTKLM SFGSNHQYLE CIKSAYDFAS GELLTLMKDK YDLIGKLRSL KRYLLLDQGD FLVHFMDIAR EELTKKPEEI
401: SAEKLQSLLD IALRSTAAAS DPSHEELICC VERSSLLKKL GTLKDLDCAY PADKLAAADV DQSMQLSITG LETFCLSNKV QWPLSLVISR KALTKYQLIF
501: RLLFHCKHVS RQLCAAWQIQ QVFRSVKILG TPILRSSILC RSMLKFVNSL LHYLTFEVLE PNWHLMHDRL QTARSIDEVI QIHDFFLQKC LKECLLLSPE
601: LLVKIEKLKG LCLQYATSIQ LLMPSIDVTN SENTSKSGKS RSRINKSQDR DQQLKLASEN VVMSESILKF EAAFNSELQS LAPTLSNSSH AEPYLTHLAQ
701: CILGVRIDQ

Best Arabidopsis Sequence Match ( AT5G17410.2 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.