Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78748 | Canola | nucleus | 100.0 | 87.45 |
| KRG89853 | Soybean | cytosol, extracellular, nucleus | 21.45 | 76.47 |
| Bra013980.1-P | Field mustard | cytosol | 60.23 | 67.47 |
| VIT_14s0066g01030.t01 | Wine grape | cytosol | 74.59 | 64.39 |
| KRH07351 | Soybean | cytosol | 68.98 | 62.95 |
| KRH66204 | Soybean | cytosol, nucleus, peroxisome | 68.65 | 62.65 |
| GSMUA_Achr5P24280_001 | Banana | cytosol | 68.65 | 58.76 |
| PGSC0003DMT400050760 | Potato | cytosol | 68.15 | 58.42 |
| Solyc02g081460.2.1 | Tomato | cytosol | 67.99 | 58.27 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 67.33 | 57.55 |
| TraesCS2A01G356400.1 | Wheat | cytosol | 67.33 | 57.55 |
| Os04t0501700-01 | Rice | nucleus | 67.49 | 57.52 |
| TraesCS2D01G355300.1 | Wheat | cytosol | 67.16 | 57.4 |
| OQU81893 | Sorghum | cytosol | 66.67 | 56.98 |
| KRG89851 | Soybean | cytosol | 43.07 | 56.49 |
| Zm00001d025793_P001 | Maize | cytosol | 66.5 | 56.36 |
| HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 67.0 | 54.42 |
| Bra028722.1-P | Field mustard | cytosol | 17.99 | 17.84 |
| Bra009216.1-P | Field mustard | cytosol | 14.52 | 13.69 |
| Bra007026.1-P | Field mustard | golgi, nucleus, plasma membrane | 18.48 | 11.2 |
Protein Annotations
| Gene3D:1.20.120.1900 | MapMan:20.1.2.1.2 | EnsemblPlantsGene:Bra006406 | EnsemblPlants:Bra006406.1 | EnsemblPlants:Bra006406.1-P | ncoils:Coil |
| InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005815 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 |
| UniProt:M4CQB7 | PFAM:PF04130 | PANTHER:PTHR19302 | PANTHER:PTHR19302:SF13 | UniParc:UPI000253FDD9 | SEG:seg |
Description
AT5G17410 (E=6e-242) | tubulin family protein
Coordinates
chrA03:+:3377224..3381792
Molecular Weight (calculated)
68307.0 Da
IEP (calculated)
6.392
GRAVY (calculated)
-0.154
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPMTPISCP TTPRWNQDRP FLTGRFHQET RASSRFDDSK RFTPESSSNS GVEQAIGCYD TPVQELIVID DLLSAMVGIE GRYISIKRVH GKEESIAFQV
101: DPSMDLALQA SSTLELAKRI FPLCECFLLI DQFVESSSQF KNGLVNHAFA AALRALLLDY QAMVAQLEHQ FRLGRLSLQG LWFYCQPMMG SMRALAAVIH
201: QASAKHFVGS AVLNLLQSQA KAMAGDNSVR SLLEKMTECA SNAYLSILER WVYEGIIDDP YGEFFIAENR SLKKESLSQD STAKYWSQRY SLKETIPGFL
301: ANIAATILTT GKYLNVMREC GHNVQVPISE RSKLTIFGSN HHYLECIKAA HEFASKELVS LIKDKYDLIG RLRSIKHYLL LDQGDFLVHF MDIARDELNK
401: KVHEISVEKL QSLLDLALRT TAAAADPRHE DLTCCVDRAS LLTTLGMHKD LDSNSIEDPV SITGLETFSL SYKVLEPNWH VMHDRLQSTK SVDEVIQHHD
501: FFLDKCLRGC LLLLPDVLKK MEKLKSVCLQ YAAATQWLIS SSIDINSQSH SQKTMIRDAT VTESIFNFER EFNSELQSLG PVLSKGSQAE PYLTHLSQWI
601: LGVSKE
101: DPSMDLALQA SSTLELAKRI FPLCECFLLI DQFVESSSQF KNGLVNHAFA AALRALLLDY QAMVAQLEHQ FRLGRLSLQG LWFYCQPMMG SMRALAAVIH
201: QASAKHFVGS AVLNLLQSQA KAMAGDNSVR SLLEKMTECA SNAYLSILER WVYEGIIDDP YGEFFIAENR SLKKESLSQD STAKYWSQRY SLKETIPGFL
301: ANIAATILTT GKYLNVMREC GHNVQVPISE RSKLTIFGSN HHYLECIKAA HEFASKELVS LIKDKYDLIG RLRSIKHYLL LDQGDFLVHF MDIARDELNK
401: KVHEISVEKL QSLLDLALRT TAAAADPRHE DLTCCVDRAS LLTTLGMHKD LDSNSIEDPV SITGLETFSL SYKVLEPNWH VMHDRLQSTK SVDEVIQHHD
501: FFLDKCLRGC LLLLPDVLKK MEKLKSVCLQ YAAATQWLIS SSIDINSQSH SQKTMIRDAT VTESIFNFER EFNSELQSLG PVLSKGSQAE PYLTHLSQWI
601: LGVSKE
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
Arabidopsis Description
Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.