CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78748	Canola	nucleus	98.82	96.68
CDY16926	Canola	cytosol	70.21	91.19
CDX82078	Canola	mitochondrion	15.49	88.24
CDY38427	Canola	cytosol	72.42	85.54
VIT_14s0066g01030.t01	Wine grape	cytosol	74.93	72.36
KRH07351	Soybean	cytosol	69.32	70.78
KRG89853	Soybean	cytosol, extracellular, nucleus	17.7	70.59
KRH66204	Soybean	cytosol, nucleus, peroxisome	69.03	70.48
KRG89851	Soybean	cytosol	46.9	68.83
PGSC0003DMT400050760	Potato	cytosol	68.14	65.35
GSMUA_Achr5P24280_001	Banana	cytosol	68.14	65.25
Solyc02g081460.2.1	Tomato	cytosol	67.99	65.21
TraesCS2B01G375700.1	Wheat	nucleus	67.55	64.6
TraesCS2A01G356400.1	Wheat	cytosol	67.55	64.6
TraesCS2D01G355300.1	Wheat	cytosol	67.55	64.6
Os04t0501700-01	Rice	nucleus	67.55	64.42
OQU81893	Sorghum	cytosol	66.81	63.89
Zm00001d025793_P001	Maize	cytosol	66.96	63.5
HORVU2Hr1G086820.13	Barley	cytosol, plastid	67.4	61.26
CDY14071	Canola	cytosol	19.47	21.57
CDY04999	Canola	cytosol	21.39	17.75
CDX78203	Canola	extracellular, vacuole	18.58	16.94
CDX73526	Canola	extracellular, vacuole	18.44	16.8
CDY14072	Canola	cytosol	4.13	15.38
CDX70079	Canola	cytosol	14.31	15.09
CDX98945	Canola	cytosol	2.21	14.71

Protein Annotations

Gene3D:1.20.120.1900	MapMan:20.1.2.1.2	GO:A0A078C1A5	EnsemblPlants:CDX70761	ProteinID:CDX70761	ProteinID:CDX70761.1
ncoils:Coil	InterPro:GCP	GO:GO:0000226	GO:GO:0000922	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005815	GO:GO:0005856
GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043015	GO:GO:0090063
EnsemblPlantsGene:GSBRNA2T00140638001	PFAM:PF04130	PANTHER:PTHR19302	PANTHER:PTHR19302:SF13	UniParc:UPI0004EEC596	SEG:seg

Description

BnaC03g08450D

Coordinates

chrLK031791:+:1904373..1909228

Molecular Weight (calculated)

76840.5 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.138

Length

678 amino acids

Sequence
(BLAST)

001: MEPMTPISCP TTPRWNQDRP FLTGRFHQET RASSRFDDSK RFTPDSSSNS GVDQAIGCYD TPVQELIVID DLLSAMVGIE GRYISIKRFH GKEESIAFQE
101: LAKRIFPLCE CFLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSLQGLWFYC QPMMGSMRAL AAVIHQASAK NFVGSAVLNL
201: LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKET IPGFLANIAA TILTTGKYLN
301: VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS KELVSLIKDK YDLIGRLRSI KHYLLLDQGD FLVHFMDIAR DELNKKVHGI SVEKLQSLLD
401: LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDSDSNS IEDPVSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER QLCGAWQIHQ
501: GIRSMNSNGT AIRRSSLLCR SMLKFISSLL HYLTFEASRE FSFSCVLEPN WHVMHDRLQS TKSVDEVIQH HDFFLDKCLR GCLLLLPDVL KKMEKLKSVC
601: LQYAAATQWL ISSSIDINSQ SHSQKTMIRD ATVTESIFNF EREFNSELQS LGPVLSKGSQ AEPYLTHLSQ WILGVSKE

Best Arabidopsis Sequence Match ( AT5G17410.2 )
(BLAST)

001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE

Arabidopsis Description

Spc97 / Spc98 family of spindle pole body (SBP) component [Source:TAIR;Acc:AT5G17410]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.